G378601 (LOC106567986)


Basic Information

Item Value
gene id G378601
gene name LOC106567986
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22179681 ~ 22180829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430355
TGGACATTCATCTTTATTTATTGAAAAGTGGATCAAAAGCAAAAGTCTGACAAATTCAAGACACATATAAAACCCCAAACATCCCCATAATCCCATAGAAGACTGCTAGTCTGAGACCTGACTAAAACCAGACAATCATAAAGACTAGAATACACTGACATGAGCTCTGTTGTACATTAAAATACAGTAATCAAGTGACAGTCACTTTCCCTGACATCCCTGATAAGCCCTGCACCCCCATTCTCTTCTCTTTCTACTTATAAACCTAATATCTGTGCAGAGAGAAAAACATCCCCCTTCCTACCCCTGTATTGTTCGCATTGGTCGCAGTCAGAATGATCTGATGCTCTAATTGGTTGTAGGCATGTGGGAGGGCTTTGGAACTACAGGAGCTCAACGTAATTAGCAGGGAACATTCCGTAGTGTCCATCCGGTCCGTAGCCTCTCCACCAACCCTCATCCTccatgTCTATCCCTGTGATGATGTCATCAGGATCAAAGGTAATCTCAGAGTCGTcagTGGCTTGGTAGTCATACAGAGCCCTGGCACGCACATCCTGTCCActggcctcctctctctgctCTGTGGGTGTGTCCTGGTAGATATCATCATAAATGTTATCCTCCTCATTTGTTGCTGCCAATGGCAGGAGCTCGTATACCTCATCTAGGTCAATGTGCCTCTCTCTACCCTGAACCAGGCCGGCAACTGTTGGCTCT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430355 True 720 lncRNA 0.46 4 22179681 22180829

Neighbor

gene id symbol gene type direction distance location
LOC110523429 acty coding upstream 126577 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 179173 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 188755 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 221171 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 332444 21842068 ~ 21847237 (+)
LOC110523432 LOC106567996 coding downstream 9539 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 587836 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 693341 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 761376 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 884825 23065654 ~ 23158020 (+)
G378653 NA non-coding upstream 19493 22159909 ~ 22160188 (+)
G378630 NA non-coding upstream 28211 22128817 ~ 22151470 (+)
G378615 NA non-coding upstream 73328 22100494 ~ 22106353 (+)
G378590 NA non-coding upstream 75099 22072417 ~ 22104582 (+)
G378588 NA non-coding upstream 108152 22071299 ~ 22071529 (+)
G378678 NA non-coding downstream 56622 22237451 ~ 22237915 (+)
G378682 NA non-coding downstream 60460 22241289 ~ 22241544 (+)
G378683 NA non-coding downstream 60805 22241634 ~ 22241965 (+)
G378684 NA non-coding downstream 61279 22242108 ~ 22242323 (+)
G378685 NA non-coding downstream 62808 22243637 ~ 22243875 (+)
LOC110523400 LOC106568542 other upstream 1020762 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1343122 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1421180 20508074 ~ 20759255 (+)
G377022 NA other upstream 1582818 20591480 ~ 20596863 (+)
G376320 NA other upstream 2195833 19983261 ~ 19983848 (+)
G378832 NA other downstream 322923 22503752 ~ 22506270 (+)
G378868 NA other downstream 421281 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1443135 23623921 ~ 23678038 (+)
G380340 NA other downstream 1559605 23740434 ~ 23741459 (+)

Expression


Co-expression Network