G378683


Basic Information

Item Value
gene id G378683
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22241634 ~ 22241965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430448
tccggaacctcctgtgacggtccacggtccggaacctcctgtgACGGTCCAGAAagtcccgctccaaggccggagccttcctctgcgccggtgcctagtccaggcacggcgtccagtccagctccaaggcaggagccttcctctgcaccgatGTCCAGTCTGGAcccggtgtccagtcccgctccacggcaggagccttcctcggcACCAAGGTTCAGTCCAGGCACAGTGTTCATCCCGGGTCCAGGGCTGGATCCACGGGATGAGCGGGTTCTTCGTCCTGCACCATTGATGTTGAATATTTAGAGCATACAATCAacgcagctctgcag

Function

NR:

description
protein Daple-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU430448 True 332 lncRNA 0.62 1 22241634 22241965

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 20265 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 188530 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 241126 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 250708 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 283124 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 526700 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 632205 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 700240 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 823689 23065654 ~ 23158020 (+)
tbca tbca coding downstream 951909 23193874 ~ 23203566 (+)
G378682 NA non-coding upstream 90 22241289 ~ 22241544 (+)
G378678 NA non-coding upstream 3719 22237451 ~ 22237915 (+)
G378601 LOC106567986 non-coding upstream 60805 22179681 ~ 22180829 (+)
G378653 NA non-coding upstream 81446 22159909 ~ 22160188 (+)
G378630 NA non-coding upstream 90164 22128817 ~ 22151470 (+)
G378684 NA non-coding downstream 143 22242108 ~ 22242323 (+)
G378685 NA non-coding downstream 1672 22243637 ~ 22243875 (+)
G378686 NA non-coding downstream 2812 22244777 ~ 22245327 (+)
G378687 NA non-coding downstream 5945 22247910 ~ 22248113 (+)
G378695 NA non-coding downstream 29782 22271747 ~ 22272208 (+)
G378660 NA other upstream 9714 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1082715 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1405075 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1483133 20508074 ~ 20759255 (+)
G377022 NA other upstream 1644771 20591480 ~ 20596863 (+)
G378832 NA other downstream 261787 22503752 ~ 22506270 (+)
G378868 NA other downstream 360145 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1381999 23623921 ~ 23678038 (+)
G380340 NA other downstream 1498469 23740434 ~ 23741459 (+)

Expression


Co-expression Network