G378685


Basic Information

Item Value
gene id G378685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22243637 ~ 22243875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430450
gggaaaaggctgcctaaatatgatccccaacaatagacagctggctctgattgagaaccataccaggccaacatagaaatgaaAAACTAGACTAACCACCCTAGTCAccccctgacctaaccaaaatagagaataaaaaggatctttaaggtcagggcgtgacaaggggactcttctctatgGTCACCTCTTGGCAGTTAAGGACTTGGTAATGGTTGGATtgggggtcacttgttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430450 True 239 lncRNA 0.45 1 22243637 22243875

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 22268 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 190533 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 243129 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 252711 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 285127 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 524790 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 630295 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 698330 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 821779 23065654 ~ 23158020 (+)
tbca tbca coding downstream 949999 23193874 ~ 23203566 (+)
G378684 NA non-coding upstream 1314 22242108 ~ 22242323 (+)
G378683 NA non-coding upstream 1672 22241634 ~ 22241965 (+)
G378682 NA non-coding upstream 2093 22241289 ~ 22241544 (+)
G378678 NA non-coding upstream 5722 22237451 ~ 22237915 (+)
G378601 LOC106567986 non-coding upstream 62808 22179681 ~ 22180829 (+)
G378686 NA non-coding downstream 902 22244777 ~ 22245327 (+)
G378687 NA non-coding downstream 4035 22247910 ~ 22248113 (+)
G378695 NA non-coding downstream 27872 22271747 ~ 22272208 (+)
G378699 NA non-coding downstream 43462 22287337 ~ 22291508 (+)
G378780 NA non-coding downstream 181977 22425852 ~ 22498136 (+)
G378660 NA other upstream 11717 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1084718 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1407078 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1485136 20508074 ~ 20759255 (+)
G377022 NA other upstream 1646774 20591480 ~ 20596863 (+)
G378832 NA other downstream 259877 22503752 ~ 22506270 (+)
G378868 NA other downstream 358235 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1380089 23623921 ~ 23678038 (+)
G380340 NA other downstream 1496559 23740434 ~ 23741459 (+)

Expression


Co-expression Network