G378699


Basic Information

Item Value
gene id G378699
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22287337 ~ 22291508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430468
ctactgtctctaatgtctATCTCTTTTCTATgtaacgtctctctctcctctatactctctgtaatgtctatctcacctctctgtaacgtctcactctcctctctactctctgtaacgtctatctcttctctctttaatgtctctctcctctctactctctgtaacgtctatctctcctctctactctctgtaacttctatctaTACTTtttgtaacgtctatctctcctctctactctctgtaacgtctcactctcctctctactctctgtaacgtctatctctcctctactctctgtaatgtctatctctcctttctactctatgtaacgtctatctctactctctgtaacttctatctctcCGCTCTGTAACTTCcatatctcctctctactctctgcaacttctatctctcctctctactctctgtaacttctatctctactctctactctctgtaacgtctatctctcctctctactctctgtaacttctatctctactctctactctctgtaacgtctatctctactctctgtaacgtctatctctcctctactctctgtaacgtctatctctcctctcttctctctgtaatGTCTATCTCTCTTTTCTACTATCTGTAacgtctcactctcctctctactctgtaaCGTCTATGTCTTTTCTATGTAACGTatcactctcctctctactctctgtaacgtctctctctactctctgtaatgtctcactctcctttctactccctgtaatgtctcactctcctctctgctctctgtaacatctatctctgctctctactgtctctaatgtctATCTCTTTTCTATgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430468 True 832 lncRNA 0.41 2 22287337 22291508

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 65968 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 234233 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 286829 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 296411 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 328827 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 477157 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 582662 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 650697 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 774146 23065654 ~ 23158020 (+)
tbca tbca coding downstream 902366 23193874 ~ 23203566 (+)
G378695 NA non-coding upstream 15129 22271747 ~ 22272208 (+)
G378687 NA non-coding upstream 39224 22247910 ~ 22248113 (+)
G378686 NA non-coding upstream 42010 22244777 ~ 22245327 (+)
G378685 NA non-coding upstream 43462 22243637 ~ 22243875 (+)
G378684 NA non-coding upstream 45014 22242108 ~ 22242323 (+)
G378780 NA non-coding downstream 134344 22425852 ~ 22498136 (+)
G378831 NA non-coding downstream 211686 22503194 ~ 22503634 (+)
G378863 NA non-coding downstream 277818 22569326 ~ 22576116 (+)
G378908 NA non-coding downstream 365811 22657319 ~ 22721825 (+)
G378914 NA non-coding downstream 434157 22725665 ~ 22727355 (+)
G378660 NA other upstream 55417 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1128418 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1450778 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1528836 20508074 ~ 20759255 (+)
G377022 NA other upstream 1690474 20591480 ~ 20596863 (+)
G378832 NA other downstream 212244 22503752 ~ 22506270 (+)
G378868 NA other downstream 310602 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1332456 23623921 ~ 23678038 (+)
G380340 NA other downstream 1448926 23740434 ~ 23741459 (+)

Expression


Co-expression Network