G378780


Basic Information

Item Value
gene id G378780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22425852 ~ 22498136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430568
ataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttgccccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagtgCCCTtgatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcaccatacatggccccattcattctttcctttacacggttcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttccaccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430568 True 345 lncRNA 0.47 2 22425852 22498136

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 204483 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 372748 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 425344 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 434926 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 467342 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 270529 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 376034 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 444069 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 567518 23065654 ~ 23158020 (+)
tbca tbca coding downstream 695738 23193874 ~ 23203566 (+)
G378699 NA non-coding upstream 134344 22287337 ~ 22291508 (+)
G378695 NA non-coding upstream 153644 22271747 ~ 22272208 (+)
G378687 NA non-coding upstream 177739 22247910 ~ 22248113 (+)
G378686 NA non-coding upstream 180525 22244777 ~ 22245327 (+)
G378685 NA non-coding upstream 181977 22243637 ~ 22243875 (+)
G378831 NA non-coding downstream 5058 22503194 ~ 22503634 (+)
G378863 NA non-coding downstream 71190 22569326 ~ 22576116 (+)
G378908 NA non-coding downstream 159183 22657319 ~ 22721825 (+)
G378914 NA non-coding downstream 227529 22725665 ~ 22727355 (+)
G378959 NA non-coding downstream 247592 22745728 ~ 22745956 (+)
G378660 NA other upstream 193932 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1266933 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1589293 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1667351 20508074 ~ 20759255 (+)
G377022 NA other upstream 1828989 20591480 ~ 20596863 (+)
G378832 NA other downstream 5616 22503752 ~ 22506270 (+)
G378868 NA other downstream 103974 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1125828 23623921 ~ 23678038 (+)
G380340 NA other downstream 1242298 23740434 ~ 23741459 (+)

Expression


Co-expression Network