G378863


Basic Information

Item Value
gene id G378863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22569326 ~ 22576116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430665
TGTTCTCAGTCAcgtccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcagtctcttccactgttctcagtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttctACTGTTctgagtcacttccactgttctcagtctattccactgttctcagtctattccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcactctcttccactgttctcagtcacttccactgttctcagtctcttccacggttctcagtctcttccattgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttctgtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttctcagtctcttccactgttcccagtcacttccactgttcccagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcggtctcttccactgttctgtctctttcactgttctcagtctcttccactgttctcagtcacttccactgttctgtctcttctactgttatcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtcacttccactgtgctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccgctgttctcagtctcttccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtctattccactgttctcagtctattccactgttctgtcttttCCACTGTTctgagtcacttccactgttctcagtcacttccactgttctcagtctcttccactgttctcactctcttccactgttcttagtcacttccactgttctcagtctcttccacggttctcagtcacttccactgttctcagtcacttccactgttctcagtctctttcactgttctgtctcttccactgttatcagtctcttccactgttctcagtcacttacactgttctcagtctcttccactgttctcagtctcttccactgttctcagtcacttccactgttctcagtcacttccactgttccttctcttctactgttctcagtcacttccactgttctgacccttccactgttctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtctcttccactgttctcagtcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcggtctcttccactgttctgtctctttcactgttctcagtctcttccactgttctcagtcacttccactgttctgactcttccactgttctcagtcacttccactgttctgtcttttctactgttctcagtcacttccactgtgctcagtcacttccactgttctcagtcacttccactgttctgtctcttccactgttctcagtcacttccactgtgctcagtcacttccactgttctgtctcttctactgttctcagtcacttccactgttctcagtcacttccactgttctcagtcacttccactgttctgtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtctcttccactgttctgtctcttctactgttctcagtctcttccactgttctcagtcacttccactgttctcagtctcttccactgttctgtc

Function

NR:

description
uncharacterized protein LOC111190814 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430665 True 2097 lncRNA 0.47 3 22569326 22576116

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 347957 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 516222 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 568818 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 578400 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 610816 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 192549 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 298054 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 366089 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 489538 23065654 ~ 23158020 (+)
tbca tbca coding downstream 617758 23193874 ~ 23203566 (+)
G378831 NA non-coding upstream 65692 22503194 ~ 22503634 (+)
G378780 NA non-coding upstream 71190 22425852 ~ 22498136 (+)
G378699 NA non-coding upstream 277818 22287337 ~ 22291508 (+)
G378695 NA non-coding upstream 297118 22271747 ~ 22272208 (+)
G378687 NA non-coding upstream 321213 22247910 ~ 22248113 (+)
G378908 NA non-coding downstream 81203 22657319 ~ 22721825 (+)
G378914 NA non-coding downstream 149549 22725665 ~ 22727355 (+)
G378959 NA non-coding downstream 169612 22745728 ~ 22745956 (+)
G378962 NA non-coding downstream 174466 22750582 ~ 22750805 (+)
G378912 LOC106568093 non-coding downstream 223587 22799703 ~ 22801978 (+)
G378832 NA other upstream 63056 22503752 ~ 22506270 (+)
G378660 NA other upstream 337406 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1410407 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1732767 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1810825 20508074 ~ 20759255 (+)
G378868 NA other downstream 25994 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1047848 23623921 ~ 23678038 (+)
G380340 NA other downstream 1164318 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1262408 23838502 ~ 23844345 (+)

Expression


Co-expression Network