G378908


Basic Information

Item Value
gene id G378908
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22657319 ~ 22721825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430714
attaatgagagaGCTAAGAGGGAcgcagcacttttgaaatgtacaggctataggctacatgtgcgccaccaagttagaacagtaggcTACGTTATGAGGTGGAAATTGACCAAATGATTAGTGTGAGGTATAAGGGCTagtaacagcttactacacaacatacacttagtattactttattagctacactttgcaccctcttggcattctctcaaccagcttcatgaggtagtcacctggaattaatttcaattaagaggtgtgccttgttaaaagttaatttgtggaatttctttccttctaaatgcctttcagccaatcagttgtgatgtgactaggtaggggtggtatacagaagataaccctatttggtaaaagacaaagtccatattatggctagaaaaactcaaataagcaaagagaaatgacagtccatcattacgttaagacatggtcagtcaatgcggaaaatttcaagaagtttgaaagtttcttcaagtgcagtcgcaaaaaccatccagcgcaatgatgaaactgactctcttGAGGACCGTCAGAGGAATGGttgacccagaattacctctgctactgaggataagtttattagttACCAGCCccagaaattgcatcccaaataaatgctacacagtgttcaagtaacagacatcaactgttcagaggaaactgtgtgaatcaggccttcatggtccaattgctgcaaggaaaccactactaaaggacaccaataagaagagacttgtttgggccaagaaacacgaccaatggacatgagatcggtggaaatctttcctttggtctgatgagtccaaattagatttttggttccaacagcagtgtctttgtgagacgcagagtaggttaacagatgatctctgcatgtgtggttcccctGTGAAGTATGGAGgacgaggtgtgatggtgctttgccggtgacactgtctgatttatttagaattcaaggcacacttgaccagcatggctatcacagcattctgcagcgatacgccatcccttctggtttgcgcttattgggacgaagttgttttcaacaggaaaacctcaacacctccaagctgtgtaagggctatttgaccaggaaggagagtgatgagtgctgcatgAGATGACCTGGATtctacaatcacccgacctcaacccaattgagatagtttgggatgagttggaccgcagagtgaaggaaaagcagccaagtgctcagcatgttggaactccttcaagaatgttggaaaagcattcctcatgaagctggttgagagaatgccaagaatgtgcaaagctgtcaaggtaaaTTATGTCTaatttgaacaatctcaaatataaaaatgtattttgatttgtttaacacttttttggttactacatgattcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430714 True 1411 lncRNA 0.42 2 22657319 22721825

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 435950 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 604215 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 656811 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 666393 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 698809 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 46840 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 152345 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 220380 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 343829 23065654 ~ 23158020 (+)
tbca tbca coding downstream 472049 23193874 ~ 23203566 (+)
G378863 NA non-coding upstream 81203 22569326 ~ 22576116 (+)
G378831 NA non-coding upstream 153685 22503194 ~ 22503634 (+)
G378780 NA non-coding upstream 159183 22425852 ~ 22498136 (+)
G378699 NA non-coding upstream 365811 22287337 ~ 22291508 (+)
G378695 NA non-coding upstream 385111 22271747 ~ 22272208 (+)
G378914 NA non-coding downstream 3840 22725665 ~ 22727355 (+)
G378959 NA non-coding downstream 23903 22745728 ~ 22745956 (+)
G378962 NA non-coding downstream 28757 22750582 ~ 22750805 (+)
G378912 LOC106568093 non-coding downstream 77878 22799703 ~ 22801978 (+)
G379021 NA non-coding downstream 134244 22856069 ~ 22863242 (+)
G378868 NA other upstream 27650 22602110 ~ 22629669 (+)
G378832 NA other upstream 151049 22503752 ~ 22506270 (+)
G378660 NA other upstream 425399 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1498400 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1820760 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 902139 23623921 ~ 23678038 (+)
G380340 NA other downstream 1018609 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1116699 23838502 ~ 23844345 (+)
G381239 NA other downstream 1965914 24687739 ~ 24776429 (+)

Expression


Co-expression Network