G378914


Basic Information

Item Value
gene id G378914
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22725665 ~ 22727355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430720
TCTGGCTGCTAGGGGTTGTGGCCCAGTTCACCTTGACCTCCTTACCCATTATTTTACGACCATTCATGGCTGCGAGTGACGAGGCAGCGTGCCTGTGTTCGTAGAACTCCACAAAGCAGTATGGGTCATTACCTGCCGTCTGGGGGGGGGAACAGGGGACAGGAACAGGGACTTTACCTTTGACACCAGACCTGCCCACCGTTTCATCCTACCCTTGTGAAATGTCAGTCTAGTTGAGTCTCCCTccttaaataagaatttgttactggcttgcctaattaaataaaaaca

Function

NR:

description
PREDICTED: nucleolysin TIA-1 isoform p40-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430720 True 291 lncRNA 0.49 2 22725665 22727355

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 504296 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 672561 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 725157 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 734739 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 767155 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 41310 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 146815 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 214850 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 338299 23065654 ~ 23158020 (+)
tbca tbca coding downstream 466519 23193874 ~ 23203566 (+)
G378908 NA non-coding upstream 3840 22657319 ~ 22721825 (+)
G378863 NA non-coding upstream 149549 22569326 ~ 22576116 (+)
G378831 NA non-coding upstream 222031 22503194 ~ 22503634 (+)
G378780 NA non-coding upstream 227529 22425852 ~ 22498136 (+)
G378699 NA non-coding upstream 434157 22287337 ~ 22291508 (+)
G378959 NA non-coding downstream 18373 22745728 ~ 22745956 (+)
G378962 NA non-coding downstream 23227 22750582 ~ 22750805 (+)
G378912 LOC106568093 non-coding downstream 72348 22799703 ~ 22801978 (+)
G379021 NA non-coding downstream 128714 22856069 ~ 22863242 (+)
G379066 NA non-coding downstream 222391 22949746 ~ 22951909 (+)
G378868 NA other upstream 95996 22602110 ~ 22629669 (+)
G378832 NA other upstream 219395 22503752 ~ 22506270 (+)
G378660 NA other upstream 493745 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1566746 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1889106 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 896609 23623921 ~ 23678038 (+)
G380340 NA other downstream 1013079 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1111169 23838502 ~ 23844345 (+)
G381239 NA other downstream 1960384 24687739 ~ 24776429 (+)

Expression


Co-expression Network