G378962


Basic Information

Item Value
gene id G378962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22750582 ~ 22750805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430769
GTACAGCATTACTCCTAAGAGGTCCCCTTTTGTAAAGACGGTAATGCAATTGAAAGACTAACACCTGGGTAGGTGTTAGGCTACACTTGTTTTGATAGTAAGTTTctaattagctaaagttgtccaacctttgggttgctagatttTTGCGTTATAAGACCACCCATCCACCCCAACCAACTGCCATACTAAGTAACCatttgtcttatgtaaccataccaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430769 True 224 lncRNA 0.40 1 22750582 22750805

Neighbor

gene id symbol gene type direction distance location
LOC110523432 LOC106567996 coding upstream 529213 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 697478 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 750074 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 759656 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 792072 21954083 ~ 21958510 (+)
LOC110523445 LOC106568100 coding downstream 17860 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 123365 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 191400 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 314849 23065654 ~ 23158020 (+)
tbca tbca coding downstream 443069 23193874 ~ 23203566 (+)
G378959 NA non-coding upstream 4626 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 23227 22725665 ~ 22727355 (+)
G378908 NA non-coding upstream 28757 22657319 ~ 22721825 (+)
G378863 NA non-coding upstream 174466 22569326 ~ 22576116 (+)
G378831 NA non-coding upstream 246948 22503194 ~ 22503634 (+)
G378912 LOC106568093 non-coding downstream 48898 22799703 ~ 22801978 (+)
G379021 NA non-coding downstream 105264 22856069 ~ 22863242 (+)
G379066 NA non-coding downstream 198941 22949746 ~ 22951909 (+)
G379100 NA non-coding downstream 257271 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 258556 23009361 ~ 23009598 (+)
G378868 NA other upstream 120913 22602110 ~ 22629669 (+)
G378832 NA other upstream 244312 22503752 ~ 22506270 (+)
G378660 NA other upstream 518662 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1591663 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1914023 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 873159 23623921 ~ 23678038 (+)
G380340 NA other downstream 989629 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1087719 23838502 ~ 23844345 (+)
G381239 NA other downstream 1936934 24687739 ~ 24776429 (+)

Expression


Co-expression Network