G378912 (LOC106568093)


Basic Information

Item Value
gene id G378912
gene name LOC106568093
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22799703 ~ 22801978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430718
CGGGACTTGGTTTTATTTTGAAGGGAAAAAATATAACTGGGATATATAAAGCAGTTAGGAATGCAATAACAGTAAGACGAGAGTAAAAGGCAAAAGAAAAGATTTAAGCACATATACATTTCTTAAATCATGAAGTGTTTTACTCAATAAATACTTAGGATGTTTTTAAGCATGCCAATGTATTCTCAGGatgtacattacattATATAATAATATTGCACTTATCTTGTGACGGACTCATCTTCAAATCGGACCAGGCCAGCCACATGCATAAGGTCATACAAGTCAAAGGTTATAGGTCAAACTGTAGTGTTAGCTAAAGACAGAAGAGATGGAAATGAATAATACAAAAGATTTTGCCAATCACgtataaaataaacaaaatacatAAAGATCCCAAATACAATGAAGAAAAGTGACAAAAATGAAAGTGATTTTCCAACAGACAGGTTTGTACTGTATATGGACAGGACTAGGAAGGGGGCATCTCAATATAACTAAAATGGCTGCCTCTACACTCCTAAACTTCTCTCCATCTGCACTAAAAAAATATCTGTACAGTGAAAAGCTAATTCCTCTGAGTCAATATACTGTGTTGCTGTCACCTACACACCGTTTATAGATTCAGTGCAGATAAAGGAGAAGAAGTCAGAGATATGCGGACGCTGCAGAAAGTCACATGATTGGGTTTTAACCACTTGCCATGAAGACACAGCATGAAGAATGAGCCCCATATGCTCAGCCTACTGACTCACTGTGGTTAGTTACCAGTACCATACCACTGGTGGATTCAGTGAGGTAAACAcagatagaaatataatgaatagagcTGACAAGGTCCCTGTTCTACATGACCGACAATCATATCAGTTCTGCACCATACATTTCTATCTGAGCGTTTTTCAAGACCGGAAAAATACAGTACTACCACCTTTGACCTGGCCAAATGTCAACTTGGACAGCAGTTGTACACACAGTCCTTCAGTTCCAAACAGTACATTTTCTCTTCAACATGTCCTTCATACTCAGTGCATGATTTATTACAGTAAACAGAGATTGTTCCTATAGAAATAGTTTCAGTTTTGACAGCTCTTAGATAAAACAGATCAAATAATCAGGCGTAGATAACGTGAAGCGACTCCACGGTAATAGTGGACTCATGAAAAATAATAACAGTGAAAATAAAGCAgtgaaaaaagaaaaagaaacactCCTTAAAAAGAAGGTAAAAGCCCACTTTAAAAACCATCAACAGAAACACGTGTCATGATGGAATTGTAGAGCTGGACAGATCAGCTGACTTTAAAGGGCACTGGTTTTACAGAGAAAAATATCATGACTTCTTGACACCAGGGGTTGCCACGCTCACCCGCAGAGGACTGGACGGTGTGAGTGCAGGCATTTTGTTCCAGCCAAACAATAACACATTTTATTCTATGGGGGGTTGAATTAACATTAAAGAAAACACTCAATCCTGTCAAACGGAAAACCAACTCACCCCAGCAACCTAACCTCTCCAACCTCATAGTTAATTCTATATAAAGGGATCCCAGAACCCTAGCTCTCCAGTCGGTGCACTGACAAGGAGCCTTATTCCCCTGCTTGATCCAGGACAAAGAAGGAATCGAGTGAAGGAATTACTTTTACATAGTGACTTTCATTACTAGCTTCTCAAAGTGCTTGACTATATAGAGCGTGAGGAGTCAGCACAACACAGAAAACCAGGAGCAAAGGCTAGTGGTCCATTACAAAGACCAGAAGAAATAGTAAGAAATAGTTAACATCTCTACTCAGGAAACATCTCAACTCAGTTTTCAGTCTGTCAATGTGGAGCCAGAAATAGTAGATGGTAGTGgctgaggtcaaaggtcagagtCCCAGTCGgtgccgttgtgtgtgtgtgtgtgtatctagttCTCCCAGTCGGTGCAGGGCAGGCCTTCGTCCTCAGACTCAGACTCAGGCGAAGCCTCCTTGATGCGTCTCAGGGCTTCATGGATGGAGCGGGTCAGAGCGTCGGTAGAGTGGGGGAACAAGCCCTTGGTGTGTCGCTGCTGTTCTGGCCGCGTCCGCACCTTCTTCAACCGGACACCCTGCCGGATCTGGACCAGAATGTTGTTGCTCTCGTCATCGTCTGGGTCGGGGGCTAGGACTCTCAGCTCAGCCTTACGCAGGTGGAAGCTGCCTCTCTTCAGGGAGTTCAGGACCTCGTCCATGGGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430718 True 2221 lncRNA 0.42 3 22799703 22801978

Neighbor

gene id symbol gene type direction distance location
LOC110523445 LOC106568100 coding upstream 282 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 578334 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 746599 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 799195 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 808777 21961475 ~ 21990926 (+)
dmgdh dmgdh coding downstream 72192 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 140227 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 263676 23065654 ~ 23158020 (+)
tbca tbca coding downstream 391896 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 406755 23208733 ~ 23214815 (+)
G378962 NA non-coding upstream 48898 22750582 ~ 22750805 (+)
G378959 NA non-coding upstream 53747 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 72348 22725665 ~ 22727355 (+)
G378908 NA non-coding upstream 77878 22657319 ~ 22721825 (+)
G378863 NA non-coding upstream 223587 22569326 ~ 22576116 (+)
G379021 NA non-coding downstream 54091 22856069 ~ 22863242 (+)
G379066 NA non-coding downstream 147768 22949746 ~ 22951909 (+)
G379100 NA non-coding downstream 206098 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 207383 23009361 ~ 23009598 (+)
G379104 NA non-coding downstream 208925 23010903 ~ 23011258 (+)
G378868 NA other upstream 170034 22602110 ~ 22629669 (+)
G378832 NA other upstream 293433 22503752 ~ 22506270 (+)
G378660 NA other upstream 567783 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1640784 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1963144 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 821986 23623921 ~ 23678038 (+)
G380340 NA other downstream 938456 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 1036546 23838502 ~ 23844345 (+)
G381239 NA other downstream 1885761 24687739 ~ 24776429 (+)

Expression


Co-expression Network