G379021


Basic Information

Item Value
gene id G379021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22856069 ~ 22863242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430835
tttaaaataaaaaaaaaaaatgatgaagCAAGCAGAACAAAACctaactgaatttgtccaatagaaacttgttTTGATGCCAAATGTTGTTTGGCGTAAACAGTTGTTgctaaatgttttgcaacagactCTGCGTAATGACTACACCACAGATCAACAGCACACTCTGGAGACATGTAGACACAACAGCAACTTTTTAGTTTGTTTCACTAACACCACGCATCACTGGCTTGATGACTCCTGTAACATTCTGTCCAAGTAAAGCACATATCAAGTTTGAAATGAGAAATCTATAACATGTTACTATAATTATTACAGAAGAGTATATGATGGTGCTACACTATGTACAGGTGGTGCAAATCTAAATGACAAGAAAAATAACTTTTGGTTGACAAAAAGATGGTCCTGGAAATCAGGAGAATAAGACTTTATCTGATAAGTTTTGGTATGTAAACTTAGAATATGTGGGAGCTCTTCCCTCTGCCTTTCTCACACAataccacaacacaccacccaCGAGTAGAGAACAGCATCCTCCTGGCTGGTTTACCTCCCTCCTAGCCCAGGAGGAATGCTCAGTGGCTGGCCTTTGCCTTCTCAAACAGGGGCTTGAGCTCGTCCAGGCTGGTGGCCTCCTTGTGCTGCATCAGGTCAGCATGGCCTTTGGTGACACCCCAGCTGTCAGGGGTGGACATGGCGGGACACTTGGGACGGCCGGATGCTGGCTTCAGCTTCTCCCAGTAGTCACGGCGGG
>TU430837
tttaaaataaaaaaaaaaaaatgatgaagCAAGCAGAACAAAACctaactgaatttgtccaatagaaacttgttTTGATGCCAAATGTTGTTTGGCGTAAACAGTTGTTgctaaatgttttgcaacagactCTGCGTAATGACTACACCACAGATCAACAGCACACTCTGGAGACATGTAGACACAACAGCAACTTTTTAGTTTGTTTCACTAACACCACGCATCACTGGCTTGATGACTCCTGTAACATTCTGTCCAAGTAAAGCACATATCAAGTTTGAAATGAGAAATCTATAACATGTTACTATAATTATTACAGAAGAGTATATGATGGTGCTACACTATGTACAGGTGGTGCAAATCTAAATGACAAGAAAAATAACTTTTGGTTGACAAAAAGATGGTCCTGGAAATCAGGAGAATAAGACTTTATCTGATAAGTTTTGGTATGTAAACTTAGAATATGTGGGAGCTCTTCCCTCTGCCTTTCTCACACAataccacaacacaccacccaCGAGTAGAGAACAGCATCCTCCTGGCTGGTTTACCTCCCTCCTAGCCCAGGAGGAATGCTCAGTGGCTGGCCTTTGCCTTCTCAAACAGGGGCTTGAGCTCGTCCAGGCTGGTGGCCTCCTTGTGCTGCATCAGGTCAGCATGGCCTTTGGTGACACCCCAGCTGTCAGGGGTGGACATGGCGGGACACTTGGGACGGCCGGATGCTGGCTTCAGCTTCTCCCAGTAGTCACGGCGGG
>TU430836
tttaaaaaataaaaaaaatgatgaagCAAGCAGAACAAAACctaactgaatttgtccaatagaaacttgttTTGATGCCAAATGTTGTTTGGCGTAAACAGTTGTTgctaaatgttttgcaacagactCTGCGTAATGACTACACCACAGATCAACAGCACACTCTGGAGACATGTAGACACAACAGCAACTTTTTAGTTTGTTTCACTAACACCACGCATCACTGGCTTGATGACTCCTGTAACATTCTGTCCAAGTAAAGCACATATCAAGTTTGAAATGAGAAATCTATAACATGTTACTATAATTATTACAGAAGAGTATATGATGGTGCTACACTATGTACAGGTGGTGCAAATCTAAATGACAAGAAAAATAACTTTTGGTTGACAAAAAGATGGTCCTGGAAATCAGGAGAATAAGACTTTATCTGATAAGTTTTGGTATGTAAACTTAGAATATGTGGGAGCTCTTCCCTCTGCCTTTCTCACACAataccacaacacaccacccaCGAGTAGAGAACAGCATCCTCCTGGCTGGTTTACCTCCCTCCTAGCCCAGGAGGAATGCTCAGTGGCTGGCCTTTGCCTTCTCAAACAGGGGCTTGAGCTCGTCCAGGCTGGTGGCCTCCTTGTGCTGCATCAGGTCAGCATGGCCTTTGGTGACACCCCAGCTGTCAGGGGTGGACATGGCGGGACACTTGGGACGGCCGGATGCTGGCTTCAGCTTCTCCCAGTAGTCACGGCGGG

Function

NR:

description
betain homocysteine methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430835 False 754 lncRNA 0.44 2 22856069 22863242
TU430837 False 755 lncRNA 0.44 2 22856069 22863242
TU430836 True 752 lncRNA 0.44 2 22856103 22863242

Neighbor

gene id symbol gene type direction distance location
LOC110523445 LOC106568100 coding upstream 56648 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 634700 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 802965 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 855561 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 865143 21961475 ~ 21990926 (+)
dmgdh dmgdh coding downstream 10928 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 78963 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 202412 23065654 ~ 23158020 (+)
tbca tbca coding downstream 330632 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 345491 23208733 ~ 23214815 (+)
G378912 LOC106568093 non-coding upstream 54091 22799703 ~ 22801978 (+)
G378962 NA non-coding upstream 105264 22750582 ~ 22750805 (+)
G378959 NA non-coding upstream 110113 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 128714 22725665 ~ 22727355 (+)
G378908 NA non-coding upstream 134244 22657319 ~ 22721825 (+)
G379066 NA non-coding downstream 86504 22949746 ~ 22951909 (+)
G379100 NA non-coding downstream 144834 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 146119 23009361 ~ 23009598 (+)
G379104 NA non-coding downstream 147661 23010903 ~ 23011258 (+)
G379105 NA non-coding downstream 150236 23013478 ~ 23013715 (+)
G378868 NA other upstream 226400 22602110 ~ 22629669 (+)
G378832 NA other upstream 349799 22503752 ~ 22506270 (+)
G378660 NA other upstream 624149 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1697150 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 2019510 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 760722 23623921 ~ 23678038 (+)
G380340 NA other downstream 877192 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 975282 23838502 ~ 23844345 (+)
G381239 NA other downstream 1824497 24687739 ~ 24776429 (+)

Expression


Co-expression Network