G379066


Basic Information

Item Value
gene id G379066
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22949746 ~ 22951909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430902
CCTAGCTGCAGGTGATAAACTATGGTAGGGTAGTCATGGAGACAGAGAAGGCCAggtcctaaatcaaatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgggtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataagaatacagtcgatgatatagagtacagtatatatacgtatgcatatgagatgaataatgtagggtaagtaacattatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaagctgttttttaaaCAGAGGGGGACAGTTCAGTCATTGTGAGTGGCCTGGGTCCTGCAGGAGGTTTTGTGTAGTTTCACATAGTAAATATGTTTCTATTGATTTCCATTGATTATGTCTAATCAATCCAAATGGAAATTCTCATAGTGCAATAAAATAATCCCTGAGAGCTAGTGTTTAGAAAGTGTTTTTGAATAAGGCCCACTGTTTCCACTCATATTGACTGGAAACCTAAAGCCCTGATCTATGGTCTCTGTGTATAGGCCAGAGTAATGGTGtgtaccatgtctctctctgtgtataggcCAGACTAATGGTGTGTAGCAGATCTCTCTGTATATAGACCTGGGTAATGATGtgtatcatctctctctgtgtataggcCAGGGTAATGATGTGTATCATCTCTCTCTGAGTATAGGCCAGGGTAATGGTGTGTATCAGGTCTCTCTGTGTATAGGCCAGGGTAATGGTGTGTAGCAGGTCTCTCTGTATATAGGCCAGGGTAATGGTGtgtatcatctctctctgtgtataggcCAGGGTAATGGTGTCTAGCAGGTATCTCTGTGTATAGGCCAGGGTAATGGTGTGTATCAGGTCTCTCTGTATATAGGCCAGGGTAATGGTGtgtatcatctctctctgtgtacaggCCAGGGTAATGGTGTGTATCAGGTCTCTCTGTATATAGGCCAGGGTAATGGTGTGTACCAGGTCTCTCTGTGTATAGGCCAAGGTAATGGTGTGTACCAGGCTCTCTCTATGTATAGCCCAGGGTAATGGTGTGTAGCATGCTCTCTCTGTATATAAGGCCAGGGTAAAAGTGTGCATCAGGTCTCTGTGTGTAGGCCAGGGTAATGGGGTGTACCAGGCTCTCTCTGTATATAGGCCAGTTTAATGGGGTGTATCAGGCTCTTTCTGTGTGTAGGCCAGGGTAATGGTGTGTACCAGGCCTCTCTGTATATAGGCCAGTTTAATGGGGTGTATCAGGCTCTCTCTGTGTATAGGCCATAGTAATGGTGTGTACCAGGCTCTCTctgtgtaatgtatgtaatgtatgggGTTATCTTAATGGTGTGTACCAGGCCTCTCTGTGTATAGGCCATAGTAATGGTGTGTACCAGGCTCTCTctgtgtaatgtatgtaatgtatgggGTTATCTTAATGGTGTGTGCAGCGGTGAATGGATTTGTAGTTGAGAGAAAGAGTCTCCagggttggctgctgctcctgctgctgcaggTGACTGGAGAGCACTCATACTGGACCGGACAGGGGCGAGATATAGCGTTGTAATACCAGAGGactagagacacacacatacacacgtacacttACATGCACTCACACATGACCATGCCTAATATGATTCACAAAAATTTGAAGCTTGTTTTTATTGTCTCTAATTCTTCATGTCAGACTGCCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430902 True 2047 lncRNA 0.43 2 22949746 22951909

Neighbor

gene id symbol gene type direction distance location
dmgdh dmgdh coding upstream 46311 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 150325 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 728377 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 896642 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 949238 21997656 ~ 22000508 (+)
LOC110523451 ap3b1 coding downstream 113745 23065654 ~ 23158020 (+)
tbca tbca coding downstream 241965 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 256824 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 285894 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 419057 23370966 ~ 23391981 (+)
G379021 NA non-coding upstream 86504 22856069 ~ 22863242 (+)
G378912 LOC106568093 non-coding upstream 147768 22799703 ~ 22801978 (+)
G378962 NA non-coding upstream 198941 22750582 ~ 22750805 (+)
G378959 NA non-coding upstream 203790 22745728 ~ 22745956 (+)
G378914 NA non-coding upstream 222391 22725665 ~ 22727355 (+)
G379100 NA non-coding downstream 56167 23008076 ~ 23008349 (+)
G379102 NA non-coding downstream 57452 23009361 ~ 23009598 (+)
G379104 NA non-coding downstream 58994 23010903 ~ 23011258 (+)
G379105 NA non-coding downstream 61569 23013478 ~ 23013715 (+)
G379111 NA non-coding downstream 68731 23020640 ~ 23020849 (+)
G378868 NA other upstream 320077 22602110 ~ 22629669 (+)
G378832 NA other upstream 443476 22503752 ~ 22506270 (+)
G378660 NA other upstream 717826 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1790827 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 2113187 20831111 ~ 20842676 (+)
LOC110522832 LOC106567816 other downstream 672055 23623921 ~ 23678038 (+)
G380340 NA other downstream 788525 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 886615 23838502 ~ 23844345 (+)
G381239 NA other downstream 1735830 24687739 ~ 24776429 (+)
G382186 NA other downstream 2273533 25225442 ~ 25225730 (+)

Expression


Co-expression Network