G379104


Basic Information

Item Value
gene id G379104
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23010903 ~ 23011258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430943
GTCAGTAATCATTACTGATGCTTTACCCTGGTCTTCTGAAACGTATTGTGGCTCGCATGTCATATTACAGGGGATAGAGACAAAAACCGTACCTGTACCATTACACTGGGTCCACTTAGTGTCAGACTTGGTATCAGGACGTTTCCGTGTTGGTGTAGTATCTACACTCCCAGTAAAAGGAGTCACATTGCTACTAGGGAATGATATTGCTGGTGGTAATGTCATTCCTGTGTTAGAGGTAGTAGACAATCCAGAAATCAGAACTACAGATGAGAAATTGGTTCAAGCATTTCCACATGTTTTTCCTGCTTGTGTGTTAACGAGGGCACAATCTCGCAAGCTAGGAGATGTGGTGG

Function

NR:

description
uncharacterized protein LOC110509518

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430943 True 356 lncRNA 0.44 1 23010903 23011258

Neighbor

gene id symbol gene type direction distance location
lhfpl2a lhfpl2 coding upstream 3588 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 107468 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 211482 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 789534 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 957799 22045971 ~ 22053104 (+)
LOC110523451 ap3b1 coding downstream 54396 23065654 ~ 23158020 (+)
tbca tbca coding downstream 182616 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 197475 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 226545 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 359708 23370966 ~ 23391981 (+)
G379102 NA non-coding upstream 1305 23009361 ~ 23009598 (+)
G379100 NA non-coding upstream 2554 23008076 ~ 23008349 (+)
G379066 NA non-coding upstream 58994 22949746 ~ 22951909 (+)
G379021 NA non-coding upstream 147661 22856069 ~ 22863242 (+)
G378912 LOC106568093 non-coding upstream 208925 22799703 ~ 22801978 (+)
G379105 NA non-coding downstream 2220 23013478 ~ 23013715 (+)
G379111 NA non-coding downstream 9382 23020640 ~ 23020849 (+)
G379112 NA non-coding downstream 9617 23020875 ~ 23021099 (+)
G379113 NA non-coding downstream 9966 23021224 ~ 23023030 (+)
G379114 NA non-coding downstream 11891 23023149 ~ 23023489 (+)
G378868 NA other upstream 381234 22602110 ~ 22629669 (+)
G378832 NA other upstream 504633 22503752 ~ 22506270 (+)
G378660 NA other upstream 778983 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1851984 21108129 ~ 21160149 (+)
LOC110522832 LOC106567816 other downstream 612706 23623921 ~ 23678038 (+)
G380340 NA other downstream 729176 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 827266 23838502 ~ 23844345 (+)
G381239 NA other downstream 1676481 24687739 ~ 24776429 (+)
G382186 NA other downstream 2214184 25225442 ~ 25225730 (+)

Expression


Co-expression Network