G379115


Basic Information

Item Value
gene id G379115
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23023584 ~ 23023813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430955
GTGAAAACACGGCTacccactaaacactgggtgcttaaaacaaaatgccccagatacggggaaacaaaaatataacagcACCATACACTAACATACAACAGCACGTTCGTCTCTAACCaacaccagggttacaatatTCATTCCCGCACAAAGAAAcgggcgggccggctgactaataaagcccaactaattacaAACTTAAAACAGGTGCTATCAATAAACATATAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430955 True 230 lncRNA 0.42 1 23023584 23023813

Neighbor

gene id symbol gene type direction distance location
lhfpl2a lhfpl2 coding upstream 16269 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 120149 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 224163 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 802215 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 970480 22045971 ~ 22053104 (+)
LOC110523451 ap3b1 coding downstream 41841 23065654 ~ 23158020 (+)
tbca tbca coding downstream 170061 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 184920 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 213990 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 347153 23370966 ~ 23391981 (+)
G379114 NA non-coding upstream 95 23023149 ~ 23023489 (+)
G379113 NA non-coding upstream 554 23021224 ~ 23023030 (+)
G379112 NA non-coding upstream 2485 23020875 ~ 23021099 (+)
G379111 NA non-coding upstream 2735 23020640 ~ 23020849 (+)
G379105 NA non-coding upstream 9869 23013478 ~ 23013715 (+)
G379131 NA non-coding downstream 24643 23048456 ~ 23048691 (+)
G379139 NA non-coding downstream 30590 23054403 ~ 23054645 (+)
G379142 NA non-coding downstream 34706 23058519 ~ 23058747 (+)
G379162 NA non-coding downstream 91872 23115685 ~ 23116029 (+)
G379202 NA non-coding downstream 180058 23203871 ~ 23204099 (+)
G378868 NA other upstream 393915 22602110 ~ 22629669 (+)
G378832 NA other upstream 517314 22503752 ~ 22506270 (+)
G378660 NA other upstream 791664 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1864665 21108129 ~ 21160149 (+)
LOC110522832 LOC106567816 other downstream 600151 23623921 ~ 23678038 (+)
G380340 NA other downstream 716621 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 814711 23838502 ~ 23844345 (+)
G381239 NA other downstream 1663926 24687739 ~ 24776429 (+)
G382186 NA other downstream 2201629 25225442 ~ 25225730 (+)

Expression


Co-expression Network