G379139


Basic Information

Item Value
gene id G379139
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23054403 ~ 23054645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430979
actgaacactgaatacaaactatacaaaaacaataaacgaataacgaccgtgaagctataatgagaactgtgctgacacaagcaactaacataccacatagacaatcacccacaaacaaacagtgaaacccaggctacctaagtatgattctcaataagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaacatagaaatcccaaaatcatagaaaaaacaaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430979 True 243 lncRNA 0.37 1 23054403 23054645

Neighbor

gene id symbol gene type direction distance location
lhfpl2a lhfpl2 coding upstream 47088 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 150968 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 254982 22768665 ~ 22799421 (+)
LOC110523432 LOC106567996 coding upstream 833034 22190368 ~ 22221369 (+)
LOC110523429 acty coding upstream 1001299 22045971 ~ 22053104 (+)
LOC110523451 ap3b1 coding downstream 11009 23065654 ~ 23158020 (+)
tbca tbca coding downstream 139229 23193874 ~ 23203566 (+)
LOC110523452 otp coding downstream 154088 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 183158 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 316321 23370966 ~ 23391981 (+)
G379131 NA non-coding upstream 5712 23048456 ~ 23048691 (+)
G379115 NA non-coding upstream 30590 23023584 ~ 23023813 (+)
G379114 NA non-coding upstream 30914 23023149 ~ 23023489 (+)
G379113 NA non-coding upstream 31373 23021224 ~ 23023030 (+)
G379112 NA non-coding upstream 33304 23020875 ~ 23021099 (+)
G379142 NA non-coding downstream 3874 23058519 ~ 23058747 (+)
G379162 NA non-coding downstream 61040 23115685 ~ 23116029 (+)
G379202 NA non-coding downstream 149226 23203871 ~ 23204099 (+)
G379263 NA non-coding downstream 275723 23330368 ~ 23330594 (+)
G379273 NA non-coding downstream 296460 23351105 ~ 23351363 (+)
G378868 NA other upstream 424734 22602110 ~ 22629669 (+)
G378832 NA other upstream 548133 22503752 ~ 22506270 (+)
G378660 NA other upstream 822483 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 1895484 21108129 ~ 21160149 (+)
LOC110522832 LOC106567816 other downstream 569319 23623921 ~ 23678038 (+)
G380340 NA other downstream 685789 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 783879 23838502 ~ 23844345 (+)
G381239 NA other downstream 1633094 24687739 ~ 24776429 (+)
G382186 NA other downstream 2170797 25225442 ~ 25225730 (+)

Expression


Co-expression Network