G379202


Basic Information

Item Value
gene id G379202
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23203871 ~ 23204099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU431048
CAGGACACCGACCTCCGCTGGTCAATGAAGTCCATGCAGCCTGGTGATATCATCAGCACTGTCATTGCGAACCAGACAGTCTGCAGTGGATCTGACAGTCTGTCCGCGAATTGACCAGTAGGCCTAGTTGGGCATCAAGTCGCACTGTAGCTTGTCCACAAATTCACACGGCTTATTTTGGTCCGGAAATGTAGACATTTAAAAACTATAATTCAAGATTTTATTTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU431048 True 229 lncRNA 0.47 1 23203871 23204099

Neighbor

gene id symbol gene type direction distance location
tbca tbca coding upstream 305 23193874 ~ 23203566 (+)
LOC110523451 ap3b1 coding upstream 45851 23065654 ~ 23158020 (+)
lhfpl2a lhfpl2 coding upstream 196556 22942205 ~ 23007315 (+)
dmgdh dmgdh coding upstream 300436 22874170 ~ 22903435 (+)
LOC110523445 LOC106568100 coding upstream 404450 22768665 ~ 22799421 (+)
LOC110523452 otp coding downstream 4634 23208733 ~ 23214815 (+)
wdr41 wdr41 coding downstream 33704 23237803 ~ 23251588 (+)
LOC110523456 crhbp coding downstream 166867 23370966 ~ 23391981 (+)
LOC110522829 LOC106567920 coding downstream 217544 23421643 ~ 23422884 (+)
LOC110522830 f2rl2 coding downstream 266889 23470988 ~ 23474212 (+)
G379162 NA non-coding upstream 87842 23115685 ~ 23116029 (+)
G379142 NA non-coding upstream 145124 23058519 ~ 23058747 (+)
G379139 NA non-coding upstream 149226 23054403 ~ 23054645 (+)
G379131 NA non-coding upstream 155180 23048456 ~ 23048691 (+)
G379115 NA non-coding upstream 180058 23023584 ~ 23023813 (+)
G379263 NA non-coding downstream 126269 23330368 ~ 23330594 (+)
G379273 NA non-coding downstream 147006 23351105 ~ 23351363 (+)
G379279 aggf1 non-coding downstream 151907 23356006 ~ 23356429 (+)
G379282 NA non-coding downstream 156125 23360224 ~ 23360688 (+)
G379333 NA non-coding downstream 252266 23456365 ~ 23512877 (+)
G378868 NA other upstream 574202 22602110 ~ 22629669 (+)
G378832 NA other upstream 697601 22503752 ~ 22506270 (+)
G378660 NA other upstream 971951 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2044952 21108129 ~ 21160149 (+)
LOC110522832 LOC106567816 other downstream 419865 23623921 ~ 23678038 (+)
G380340 NA other downstream 536335 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 634425 23838502 ~ 23844345 (+)
G381239 NA other downstream 1483640 24687739 ~ 24776429 (+)
G382186 NA other downstream 2021343 25225442 ~ 25225730 (+)

Expression


Co-expression Network