G379356


Basic Information

Item Value
gene id G379356
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23490079 ~ 23492379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU431215
ggtaagggcTACACTGTtagttaggggcttgtaagtaagcatttcatggtaaggtctacactgttggttaggggcttgtaagtaagcatttcacggtaaggtctacactgttggttaacagcttgtaagtaagcatttcacggtaaggtctacactgttggttaggggcttgtaagtaagcatttcacggtaaggtctacacttgtattcgccgcatgtgccaaataaagtttgatttgatttgaaaccagTCAAGACACTTCAGTGAGTCAAGTCAACTCAATAACATCGACCCCAACCCATGGATGTGAAATTAACAACGTTTgaatatatacaatatattatacacgcacacacaatatcatacatacacacacacacacacacacactgtacatttaCACAGATGATCCATACCTGGTCAAATGCAAAAGCACGTACTGCAATGATGCCATTATGATACTGCAAAGTCATGAATATGTAAAAGGCATAGTTCACTCCAAACTATACATTTAGCTTTCAGTGAAATAGGTTAAATATCCCAACAGAGTCATGTGCTCACAACAGCTTAAGCCTGAAACCTAAATTGACGCTTCTCTAGTTAGGATTCTGCCCTTAGAGAATGATTATGTTGTAACGTATAGTAACTATGGTACCCAGGCTGACTAAAGAACGTATCTTATCACCTAACTTGTATTCATGTCAGACCCGTGGCACTGAGGACAGCAGCAATAGGTACCTTTGATTAAACTTAGGCTAGGTTTAGAATGGCTTTTTCATATCTCATCAAGTTAAAACCCTCCTGCTTTCTGCTAAAAACAGAGCTGAATTTTGATCAACTTCCCAAACTAAATGCCTGGATATTCAACAAGAAATAATCGTAAAACAAACAGCTGGTTTGGGAATGACAAGGTTGAAAAATAGGTTAGGCAAGATAGTCCGGTCTTGGGGCAGCAatcatctctctacctgggcagagccctccagaAGGTGAATGAAATAGGGTTCAACTCTTCCCACACACTCCACCCCGAATTCCAGCTCCACCCCTCTGGTCGCAGGTACAGAGTACCTAAGGTTCAAATAAATATGGCCAAGGGCTCTTTTATTCCGAATACAACTTAACAAAATGTTGGACTAATTGCACTTTAGCACTTGCACTTCAACATGTAGCCCTTTACTTGAACACGCTATCGTAAGGCCTACATACCACTGTCTTAAAGTGTTCAACTAAAGCCTAATGGGTACATGAGTGAAGACTGCTGGGTAGTGTAGTTCTACATCAAGACGTGGCCGCGTGTGTCAGGCAGTCGTAGTCCCACCAGGCCTCCTCCCACTAGTACAGCCGACGCCAGCAGGATGGGGATGGTCTTTGTGATGCCAACCAGAGAACCGAAGATCAGGTTCCCCAACACCGCTGCCAGCTTACACATGGCATTACAGAACCCAAAACCTG
>TU431220
ggtaagggcTACACTGTtagttaggggcttgtaagtaagcatttcatggtaaggtctacactgttggttaggggcttgtaagtaagcatttcacggtaaggtctacactgttggttaacagcttgtaagtaagcattttacggtaaggtctacactgttggttaacagcttgtaagtaagcatttcacggtaaggtctacactgttggttaggggcttgtaagtaagcatttcacggtaaggtctacacttgtattcgccgcatgtgccaaataaagtttgatttgatttgaaaccagTCAAGACACTTCAGTGAGTCAAGTCAACTCAATAACATCGACCCCAACCCATGGATGTGAAATTAACAACGTTTgaatatatacaatatattatacacgcacacacaatatcatacatacacacacacacacacacacactgtacatttaCACAGATGATCCATACCTGGTCAAATGCAAAAGCACGTACTGCAATGATGCCATTATGATACTGCAAAGTCATGAATATGTAAAAGGCATAGTTCACTCCAAACTATACATTTAGCTTTCAGTGAAATAGGTTAAATATCCCAACAGAGTCATGTGCTCACAACAGCTTAAGCCTGAAACCTAAATTGACGCTTCTCTAGTTAGGATTCTGCCCTTAGAGAATGATTATGTTGTAACGTATAGTAACTATGGTACCCAGGCTGACTAAAGAACGTATCTTATCACCTAACTTGTATTCATGTCAGACCCGTGGCACTGAGGACAGCAGCAATAGGTACCTTTGATTAAACTTAGGCTAGGTTTAGAATGGCTTTTTCATATCTCATCAAGTTAAAACCCTCCTGCTTTCTGCTAAAAACAGAGCTGAATTTTGATCAACTTCCCAAACTAAATGCCTGGATATTCAACAAGAAATAATCGTAAAACAAACAGCTGGTTTGGGAATGACAAGGTTGAAAAATAGGTTAGGCAAGATAGTCCGGTCTTGGGGCAGCAatcatctctctacctgggcagagccctccagaAGGTGAATGAAATAGGGTTCAACTCTTCCCACACACTCCACCCCGAATTCCAGCTCCACCCCTCTGGTCGCAGGTACAGAGTACCTAAGGTTCAAATAAATATGGCCAAGGGCTCTTTTATTCCGAATACAACTTAACAAAATGTTGGACTAATTGCACTTTAGCACTTGCACTTCAACATGTAGCCCTTTACTTGAACACGCTATCGTAAGGCCTACATACCACTGTCTTAAAGTGTTCAACTAAAGCCTAATGGGTACATGAGTGAAGACTGCTGGGTAGTGTAGTTCTACATCAAGACGTGGCCGCGTGTGTCAGGCAGTCGTAGTCCCACCAGGCCTCCTCCCACTAGTACAGCCGACGCCAGCAGGATGGGGATGGTCTTTGTGATGCCAACCAGAGAACCGAAGATCAGGTTCCCCAACACCGCTGCCAGCTTACACATGGCATTACAGAACCCAAAACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU431215 False 1456 lncRNA 0.43 2 23490079 23492379
TU431220 True 1503 lncRNA 0.43 3 23490079 23492379

Neighbor

gene id symbol gene type direction distance location
LOC110522830 f2rl2 coding upstream 15867 23470988 ~ 23474212 (+)
LOC110522829 LOC106567920 coding upstream 67195 23421643 ~ 23422884 (+)
LOC110523456 crhbp coding upstream 98098 23370966 ~ 23391981 (+)
wdr41 wdr41 coding upstream 238491 23237803 ~ 23251588 (+)
LOC110523452 otp coding upstream 275264 23208733 ~ 23214815 (+)
LOC110522832 LOC106567816 coding downstream 131542 23623921 ~ 23678038 (+)
vatg1 LOC106567829 coding downstream 217464 23709843 ~ 23711877 (+)
LOC110523463 copt1 coding downstream 220701 23713080 ~ 23735468 (+)
LOC118964576 NA coding downstream 246325 23737834 ~ 23747312 (+)
LOC110523468 vamp5 coding downstream 346123 23838502 ~ 23844345 (+)
G379282 NA non-coding upstream 129391 23360224 ~ 23360688 (+)
G379279 aggf1 non-coding upstream 133650 23356006 ~ 23356429 (+)
G379273 NA non-coding upstream 138716 23351105 ~ 23351363 (+)
G379263 NA non-coding upstream 159485 23330368 ~ 23330594 (+)
G379202 NA non-coding upstream 285980 23203871 ~ 23204099 (+)
G379392 NA non-coding downstream 67643 23560022 ~ 23567553 (+)
G379395 NA non-coding downstream 74098 23566477 ~ 23586088 (+)
G380258 NA non-coding downstream 112139 23604518 ~ 23604732 (+)
G380277 NA non-coding downstream 123478 23615857 ~ 23616253 (+)
G380279 NA non-coding downstream 125247 23617626 ~ 23618216 (+)
lhfpl2a lhfpl2 other upstream 482792 22942205 ~ 23007315 (+)
G378868 NA other upstream 860410 22602110 ~ 22629669 (+)
G378832 NA other upstream 983809 22503752 ~ 22506270 (+)
G378660 NA other upstream 1258159 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2331160 21108129 ~ 21160149 (+)
G380340 NA other downstream 248055 23740434 ~ 23741459 (+)
G381239 NA other downstream 1195360 24687739 ~ 24776429 (+)
G382186 NA other downstream 1733063 25225442 ~ 25225730 (+)

Expression


Co-expression Network