G379392


Basic Information

Item Value
gene id G379392
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23560022 ~ 23567553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU431264
ttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttagctcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU431264 True 276 lncRNA 0.41 2 23560022 23567553

Neighbor

gene id symbol gene type direction distance location
LOC110522830 f2rl2 coding upstream 85810 23470988 ~ 23474212 (+)
LOC110522829 LOC106567920 coding upstream 137138 23421643 ~ 23422884 (+)
LOC110523456 crhbp coding upstream 168041 23370966 ~ 23391981 (+)
wdr41 wdr41 coding upstream 308434 23237803 ~ 23251588 (+)
LOC110523452 otp coding upstream 345207 23208733 ~ 23214815 (+)
LOC110522832 LOC106567816 coding downstream 56368 23623921 ~ 23678038 (+)
vatg1 LOC106567829 coding downstream 142290 23709843 ~ 23711877 (+)
LOC110523463 copt1 coding downstream 145527 23713080 ~ 23735468 (+)
LOC118964576 NA coding downstream 171151 23737834 ~ 23747312 (+)
LOC110523468 vamp5 coding downstream 270949 23838502 ~ 23844345 (+)
G379350 NA non-coding upstream 44808 23476480 ~ 23515214 (+)
G379333 NA non-coding upstream 47145 23456365 ~ 23512877 (+)
G379356 NA non-coding upstream 67643 23490079 ~ 23492379 (+)
G379282 NA non-coding upstream 199334 23360224 ~ 23360688 (+)
G379279 aggf1 non-coding upstream 203593 23356006 ~ 23356429 (+)
G380258 NA non-coding downstream 36965 23604518 ~ 23604732 (+)
G380277 NA non-coding downstream 48304 23615857 ~ 23616253 (+)
G380279 NA non-coding downstream 50073 23617626 ~ 23618216 (+)
G380357 NA non-coding downstream 185668 23753221 ~ 23753477 (+)
lhfpl2a lhfpl2 other upstream 552735 22942205 ~ 23007315 (+)
G378868 NA other upstream 930353 22602110 ~ 22629669 (+)
G378832 NA other upstream 1053752 22503752 ~ 22506270 (+)
G378660 NA other upstream 1328102 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2401103 21108129 ~ 21160149 (+)
G380340 NA other downstream 172881 23740434 ~ 23741459 (+)
G381239 NA other downstream 1120186 24687739 ~ 24776429 (+)
G382186 NA other downstream 1657889 25225442 ~ 25225730 (+)

Expression


Co-expression Network