G380610 (LOC106567829)


Basic Information

Item Value
gene id G380610
gene name LOC106567829
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23709798 ~ 23711891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU432634
AACACTATTATATTGCTGTGAACAGAGGAACATCCACTATACAGGATAATATATTCATAGAGATTAAAAATCAAATTGGGACAGCAGGGAAACATTCAAACAAAACAGCAATCTTTTTTTTCCAGGCCTAACAGTCCATTAAGTGAAATAAGCACTGTATTTTGGTCTCCACAAATAAAACGAACAATATGTCCATATTAATAAACATtgcacagaaagacacacactaACCTTTACATAAAAACCTTGATACTACAAGCGATGAAGATGGGAAACAGAGACACTGCATAAGACCAAAAGAACCTCTGCCTGCTTTGACTAACCAACAGAGTGAATATGCTTTATATTTTACTGGACAAAGGTATACCTATTTGAATCATATACACATCTGTTGATTATATTTATAGAGAAAATAAACTTGTGGGTATAGCATTAAAGTTATGAGCAGGCAGGCCAAGAGGTTTGCACCATGCATGGGTGTAGTAGATGTGTCAATGAAGCATGTGTCAACTGATGGCAGTGCAATGAGAGTGTCTCAGTGTTTCCTTTGTTTAATAAGGGGTTGTGATGAGGGGGTTTAACCAGCAAAACGGTAATTGACATGGATCTCTGGCTTGATGTCACACACCATCTTAAGCAGGTTGCCCAGCACCCCTTCCCGGTTCTGCTGGTAGCTGGTCTGGATGCTACCCATCTTCCCCACAGTCTCTTTGTCCACCTCTACAGCAGAGTTACCATGGGATCCAAGAGCCGCAGCCTCCTTGGTCTTAAAATCCTTCTCCCTCTGCATACGGTACTGCTCAATCTCGGCCTGGGCTTCCTCCTTGGCCTGCTTCAGTCGACGGTTCTTACGTTTGCGGGCTTCTGCTACTTTTTCTGCAGCTCGTTTTTCAGCTTGCAAAAGCTGCTGGATACCCTGGGACTGGCTTGCCATTGTTTAGTTCGGAGAGAGATAGACGGACAAGAATATGTGGTTCCTCCAGCTGCTGGTCTGTGTTTGCAGCGAAGGTTGGTGAATTTACTGCAGTCAGCTGACAGCGCGTCACATATAGAAGGGATAACCCTGACACTTCC

Function

NR:

description
PREDICTED: V-type proton ATPase subunit G 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432634 True 1074 TUCP 0.43 3 23709798 23711891
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523461 hmdh coding downstream 9095 23678282 ~ 23700703 (-)
LOC110523460 NA coding downstream 111263 23590789 ~ 23598535 (-)
LOC110522831 LOC106563032 coding downstream 153117 23488916 ~ 23556681 (-)
LOC110523459 f2r coding downstream 249197 23456339 ~ 23512866 (-)
LOC110523458 LOC106568234 coding downstream 254434 23450567 ~ 23455364 (-)
LOC110523464 LOC106567795 coding upstream 23030 23729177 ~ 23736929 (-)
LOC110523462 LOC106567435 coding upstream 35503 23747394 ~ 23752091 (-)
LOC110523465 LOC106563023 coding upstream 55731 23767622 ~ 23804521 (-)
LOC110523467 LOC106567778 coding upstream 95146 23807037 ~ 23828218 (-)
LOC110523469 NA coding upstream 121967 23833858 ~ 23844687 (-)
G380223 NA non-coding downstream 109793 23555190 ~ 23600005 (-)
G380215 NA non-coding downstream 165977 23543346 ~ 23543821 (-)
G380214 NA non-coding downstream 167398 23542113 ~ 23542400 (-)
G380200 NA non-coding downstream 188805 23520466 ~ 23520993 (-)
G380187 NA non-coding downstream 190424 23517588 ~ 23519374 (-)
G380679 NA non-coding upstream 41862 23753753 ~ 23754050 (-)
G380680 NA non-coding upstream 42308 23754199 ~ 23754486 (-)
G380682 NA non-coding upstream 44313 23756204 ~ 23756469 (-)
jmy LOC106568093 other downstream 907547 22799696 ~ 22859199 (-)
LOC110523434 LOC106567989 other downstream 1530485 22177265 ~ 22179322 (-)
G378359 NA other downstream 1917805 21791662 ~ 21791993 (-)
G377991 NA other downstream 2680015 21029458 ~ 21029783 (-)
G380648 NA other upstream 47148 23759039 ~ 23761807 (-)
LOC110523492 LOC106567536 other upstream 1727130 25437411 ~ 25441794 (-)
G383422 NA other upstream 2284915 25996806 ~ 25998780 (-)
G385617 NA other upstream 4297376 28009267 ~ 28010077 (-)
G385769 NA other upstream 4502652 28214543 ~ 28214819 (-)

Expression

G380610(LOC106567829) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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G380610(LOC106567829) Expression in each Bioproject

Bar chart with 21 bars.
G380610(LOC106567829) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network