G380357


Basic Information

Item Value
gene id G380357
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23753221 ~ 23753477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU432366
GATAAATCGTACTTCTATGGGTAAGTAAAGTTTTtgcaaaagggctttataaattaatAAAATGCAGTGTGCAATATGGTGAACCGCATCTAACGGCTTAATGAAGTGGCTGCTGCATTCAagtagatcagtggttcccaaactttttatagtcccgtaccccttcaaacattcaacctccagctgcgtaccccctctagcaccggggtcagcgcactctcaaatgttgtgttttgccatcattgtaagcctgccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432366 True 257 lncRNA 0.44 1 23753221 23753477

Neighbor

gene id symbol gene type direction distance location
LOC118964576 NA coding upstream 5909 23737834 ~ 23747312 (+)
LOC110523463 copt1 coding upstream 17753 23713080 ~ 23735468 (+)
vatg1 LOC106567829 coding upstream 41344 23709843 ~ 23711877 (+)
LOC110522832 LOC106567816 coding upstream 75183 23623921 ~ 23678038 (+)
LOC110522830 f2rl2 coding upstream 279009 23470988 ~ 23474212 (+)
LOC110523468 vamp5 coding downstream 85025 23838502 ~ 23844345 (+)
stard4 stard4 coding downstream 94741 23848218 ~ 23853553 (+)
marveld2a mald2 coding downstream 107674 23861151 ~ 23872777 (+)
oclna ocln coding downstream 120127 23873604 ~ 23883341 (+)
LOC110523472 gramd3 coding downstream 142597 23896074 ~ 23906001 (+)
G380279 NA non-coding upstream 135005 23617626 ~ 23618216 (+)
G380277 NA non-coding upstream 136968 23615857 ~ 23616253 (+)
G380258 NA non-coding upstream 148489 23604518 ~ 23604732 (+)
G379395 NA non-coding upstream 167133 23566477 ~ 23586088 (+)
G380363 NA non-coding downstream 8544 23762021 ~ 23762408 (+)
G380365 NA non-coding downstream 9826 23763303 ~ 23763523 (+)
G380336 NA non-coding downstream 10302 23763779 ~ 23765844 (+)
G380372 NA non-coding downstream 53737 23807214 ~ 23807936 (+)
G380431 NA non-coding downstream 195116 23948593 ~ 23948796 (+)
G380340 NA other upstream 11762 23740434 ~ 23741459 (+)
lhfpl2a lhfpl2 other upstream 745934 22942205 ~ 23007315 (+)
G378868 NA other upstream 1123552 22602110 ~ 22629669 (+)
G378832 NA other upstream 1246951 22503752 ~ 22506270 (+)
G381239 NA other downstream 934262 24687739 ~ 24776429 (+)
G382186 NA other downstream 1471965 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2421468 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2684142 26437517 ~ 26502284 (+)

Expression


Co-expression Network