G380363


Basic Information

Item Value
gene id G380363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23762021 ~ 23762408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU432372
gtatgttacttttcgtatggtatgtatcaGTTTGTGGATGTctatcatccatttcatatgatatgttacgaattccactTTGTTGTGGTTAAGGGtacgggttaaggttaggtttagctaacatgctaaatagttgcaaagtagctaaaagtagttgcaaagttgctaattagctaacatgctaaagttgtccttgatgtgattcaaacacacaacaattgggttgctagacgtttgcgTTATACGCCCACCACTCCTCCCTTTACCAACCTTCCTTCTGTCTTATgcaaccataccaaacgtaacacatcatactaatttgagtgtcaaaGATTTATGTTTGCTAagttacatttagattttgagGCCAGGCTGTCAAGTGAGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432372 True 388 lncRNA 0.38 1 23762021 23762408

Neighbor

gene id symbol gene type direction distance location
LOC118964576 NA coding upstream 14709 23737834 ~ 23747312 (+)
LOC110523463 copt1 coding upstream 26553 23713080 ~ 23735468 (+)
vatg1 LOC106567829 coding upstream 50144 23709843 ~ 23711877 (+)
LOC110522832 LOC106567816 coding upstream 83983 23623921 ~ 23678038 (+)
LOC110522830 f2rl2 coding upstream 287809 23470988 ~ 23474212 (+)
LOC110523468 vamp5 coding downstream 76094 23838502 ~ 23844345 (+)
stard4 stard4 coding downstream 85810 23848218 ~ 23853553 (+)
marveld2a mald2 coding downstream 98743 23861151 ~ 23872777 (+)
oclna ocln coding downstream 111196 23873604 ~ 23883341 (+)
LOC110523472 gramd3 coding downstream 133666 23896074 ~ 23906001 (+)
G380357 NA non-coding upstream 8544 23753221 ~ 23753477 (+)
G380279 NA non-coding upstream 143805 23617626 ~ 23618216 (+)
G380277 NA non-coding upstream 145768 23615857 ~ 23616253 (+)
G380258 NA non-coding upstream 157289 23604518 ~ 23604732 (+)
G380365 NA non-coding downstream 895 23763303 ~ 23763523 (+)
G380336 NA non-coding downstream 1371 23763779 ~ 23765844 (+)
G380372 NA non-coding downstream 44806 23807214 ~ 23807936 (+)
G380431 NA non-coding downstream 186185 23948593 ~ 23948796 (+)
G380433 NA non-coding downstream 190651 23953059 ~ 23953354 (+)
G380340 NA other upstream 20562 23740434 ~ 23741459 (+)
lhfpl2a lhfpl2 other upstream 754734 22942205 ~ 23007315 (+)
G378868 NA other upstream 1132352 22602110 ~ 22629669 (+)
G378832 NA other upstream 1255751 22503752 ~ 22506270 (+)
G381239 NA other downstream 925331 24687739 ~ 24776429 (+)
G382186 NA other downstream 1463034 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2412537 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2675211 26437517 ~ 26502284 (+)

Expression


Co-expression Network