G380482


Basic Information

Item Value
gene id G380482
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24030133 ~ 24030373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU432502
gtaatacatcaaaataaagcttaacttcttgttaatccagccgctgtgtcagatttcaaaaaggctttacggcgaaagcacaccgtgcgattatctgaggatacaaaaccatgaaaacatttttcaaccaggcaggtgcgacacaaaagtcagaaatagcgatataataaatgccttacgtttgaagatcttcttctgttggcactgcaaaaggtcccagttacatcacaaatggtatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU432502 True 241 lncRNA 0.39 1 24030133 24030373

Neighbor

gene id symbol gene type direction distance location
LOC110523473 LOC106567744 coding upstream 100468 23906231 ~ 23929665 (+)
LOC110523472 gramd3 coding upstream 124132 23896074 ~ 23906001 (+)
oclna ocln coding upstream 146792 23873604 ~ 23883341 (+)
marveld2a mald2 coding upstream 157356 23861151 ~ 23872777 (+)
stard4 stard4 coding upstream 176580 23848218 ~ 23853553 (+)
zmp:0000000846 LOC106567724 coding downstream 9772 24040145 ~ 24081954 (+)
LOC110523479 srek1 coding downstream 423699 24432802 ~ 24528819 (+)
LOC110523483 LOC106567618 coding downstream 605330 24635703 ~ 24644012 (+)
trnaa-ugc-9 NA coding downstream 674342 24704715 ~ 24704786 (+)
trnaa-ugc-10 NA coding downstream 688987 24719360 ~ 24719431 (+)
G380481 NA non-coding upstream 557 24028976 ~ 24029576 (+)
G380477 NA non-coding upstream 5875 24023593 ~ 24024258 (+)
G380461 NA non-coding upstream 37853 23992079 ~ 23992280 (+)
G380457 NA non-coding upstream 47460 23982451 ~ 23982673 (+)
G380434 NA non-coding upstream 47792 23954222 ~ 23982341 (+)
G380524 NA non-coding downstream 90494 24120867 ~ 24121726 (+)
G380905 NA non-coding downstream 184413 24214786 ~ 24215037 (+)
G380930 NA non-coding downstream 199779 24230152 ~ 24230422 (+)
G380946 NA non-coding downstream 211232 24241605 ~ 24241809 (+)
G381009 NA non-coding downstream 293983 24324356 ~ 24324600 (+)
LOC110523468 vamp5 other upstream 185788 23838502 ~ 23844345 (+)
G380340 NA other upstream 288674 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 393042 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 1022846 22942205 ~ 23007315 (+)
G378868 NA other upstream 1400464 22602110 ~ 22629669 (+)
G381239 NA other downstream 657366 24687739 ~ 24776429 (+)
G382186 NA other downstream 1195069 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2144572 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2407246 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2631465 26661838 ~ 26663613 (+)

Expression


Co-expression Network