G381115



Basic Information


Item Value
gene id G381115
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24465113 ~ 24500212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU433181
gctgggtcgtgtttcggaggatgcacggctcgcgaccttcgtctctcccgagtccatatgggttttgcagcgatgagacaagactgtaactaccaattggataccacaaaatgagggagaaaaaggggtataaAAATGAAAAAGAACACccactctttccatgacagcctgaccaggtgaatccagatgaaagctatgatcccttatttgttacggtgcgtgaatgaggacccaaaagcgaatcaacttaaacagagcttctttaattaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttacagcaaacatgacgacagtctggttcaggc
>TU433182
gctgggtcgtgtttcggaggatgcacggctcgcgaccttcgtctctcccgagtccatatgggttttgcagcgatgagacaagactgtaactaccaattggataccacaaaatgagggagaaaaaggggtataaAAATGAAAAAGAACACccactctttccatgacagcctgaccaggtgaatccagatgaaagctatgatcccttatttgttacggtgcgtgaatgaggacccaaaagcgaatcaacttaaacagagcttctttaattaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttacagcaaacatgacgacagtctggttcaggc
>TU433183
gctgggtcgtgtttcggaggatgcacggctcgcgaccttcgtctctcccgagtccatatgggttttgcagcgatgagacaagactgtaactaccaattggataccacaaaatgagggagaaaaaggggtataaAAATGAAAAAGAACACccactctttccatgacagcctgaccaggtgaatccagatgaaagctatgatcccttatttgttacggtgcgtgaatgaggacccaaaagcgaatcaacttaaacagagcttctttaattaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttacagcaaacatgacgacagtctggttcaggc

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU433181 False 356 lncRNA 0.47 3 24465113 24500212
TU433182 False 356 lncRNA 0.47 3 24465113 24500212
TU433183 True 356 lncRNA 0.47 2 24465113 24500212

Neighbor


gene id symbol gene type direction distance location
zmp:0000000846 LOC106567724 coding upstream 383159 24040145 ~ 24081954 (+)
LOC110523473 LOC106567744 coding upstream 535448 23906231 ~ 23929665 (+)
LOC110523472 gramd3 coding upstream 559112 23896074 ~ 23906001 (+)
oclna ocln coding upstream 581772 23873604 ~ 23883341 (+)
marveld2a mald2 coding upstream 592336 23861151 ~ 23872777 (+)
LOC110523483 LOC106567618 coding downstream 135491 24635703 ~ 24644012 (+)
trnaa-ugc-9 NA coding downstream 204503 24704715 ~ 24704786 (+)
trnaa-ugc-10 NA coding downstream 219148 24719360 ~ 24719431 (+)
aqp3b LOC106567539 coding downstream 919493 25419705 ~ 25424226 (+)
LOC110523493 LOC106567525 coding downstream 973701 25473913 ~ 25482789 (+)
G381072 NA non-coding upstream 68620 24396239 ~ 24396493 (+)
G381071 NA non-coding upstream 69020 24395801 ~ 24396093 (+)
G381069 NA non-coding upstream 71898 24392946 ~ 24393215 (+)
G381067 NA non-coding upstream 74414 24390268 ~ 24390699 (+)
G381057 NA non-coding upstream 81200 24383646 ~ 24383913 (+)
G381104 NA non-coding downstream 7391 24507603 ~ 24510871 (+)
G381174 NA non-coding downstream 73258 24573470 ~ 24612439 (+)
G381191 NA non-coding downstream 143916 24644128 ~ 24644859 (+)
G381190 NA non-coding downstream 144805 24645017 ~ 24645870 (+)
G381234 NA non-coding downstream 179238 24679450 ~ 24679698 (+)
LOC110523468 vamp5 other upstream 620768 23838502 ~ 23844345 (+)
G380340 NA other upstream 723654 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 828022 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 1457826 22942205 ~ 23007315 (+)
G378868 NA other upstream 1835444 22602110 ~ 22629669 (+)
G381239 NA other downstream 187527 24687739 ~ 24776429 (+)
G382186 NA other downstream 725230 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 1674733 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 1937407 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2161626 26661838 ~ 26663613 (+)

Expression



Co-expression Network