G381104


Basic Information

Item Value
gene id G381104
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24507603 ~ 24510871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU433169
TATTTCTTGTTTTCCACAGGTTACCTCAGAAACAGTATAATTTTATACAAAATCAGGAATGTTGAATAAATGCATCTCAATCATCTTACTGTAGCTGTTTCCAGAGAAACCTTTGAAATAGCTATACATTAAAAGAGTTGTGTATGCATTGCAACTTATTGCTAGTTTTACAAACTCAGAGTGACTAATGCCATGATTAAttcatttaacttttttttttaagtatttacATTTTGATTAGTAATGTCTAAAAAGTCACAGGAAAATGTGctgaataaataaaaacaaggtGTGAATGTGAAGAGACCAGTTGTTGTTGGATATGGAAAACAGGTGAGCCCCGAGGTCTTAGTCCCAGATTGTCTACCGTCTATTGGACAGTTATTTTCCTTCTTTTGCCACGAATATAAAACAAATATGACCTTGAAAATCATTAGATTGTTCTTATTCCCAGATCAAAAAGTAAAAGAACAGTGTCCACAACAAAACAGCATAAAAAACTATTACAATGTTTCTTAAACTAATCTTGAGAGGGGGAAATGCAGGAGAAGTCTTAAATGTCACCGCTTGAGGCAAACATTGACCAATGACAAAAATATCTGCAGTTATTATGAGCGTGCCACTGGGGCTGCAGTTGATTAAAAAACTAGGACAGTTTCAGTTGGGCGCAATGTTCAGTTGGAATTCAAAATGGAAAAGAGGGGAGCAAACATCATTGATACAGTGTTTTCCATTCAAGTCACAAGTTGACAGTACCATAATCTTAAACTGTATGCATGAAGTAATTGAATACATACAGGTCAGGTACAGTAGATTACATACCATTTCAAATGTGTAATATTCAATATAtgcaatttagcagacacttttatccaaagcgacttacattcATGCATGCATTGATTTTACATATGGGtagtcccgggaatcaaacccacaacccttgcgatacaagcaccatgctctaccaactgagtcataCAGGACTATACATTTACACATTTGTTAGGTATTGGGATGACATAAATTACAATGTCATAACTTTATATATGCTCAGTCACAATTCAGTGTTTGCATTACAATCAATTTGTAAACAAATTTCACTGGGGCCATAACTTGTAGATATCTTTGAATTGGATCATTTTAGTTTCTGTAGGAAATACGTAACTTTTTTCATGGATTAACTCACAAAATAGACAATTCATAGGGTGATTTCATGCAAACAACACATACATCTATAAACTTTTGATCACACTGAGTGGACATAGCAGAGTAGCTTTAAAAAGCATTTTTATAATTTGACAATTCAATTAAACATtacaaatgactaaaatgtttgTTTCTTTGCTAAAGAtatgtttttataaaaaaaatattcacaATATAAATCCTGTGTAACAATATTTTATTCAAATGCAATTGGATGTCTTTCTGAATGAAAACCAATCCTATTGCTATTAAACCATTATGACAAGTCACGCGGCGTGTACTCAAGAGGAGAGCGTTTAGTTTGTGAAACAAAGTACGTGAATATTGCTTGAGGGTCAGGGTAgtcactccttccctccccttgTTCTAACAGTTCAAGGTCTATGGCACTTGACAGCTCCCCCCTAGTTCATTTGATCAACACAAAAAGAGATGATGCATGATGTCTAAAAATGTTATTTTACACACGAAGGCAAAATGTAGTTGTTTTCCGCCACTTAAAAAAATGTTAGACAGAAACCCCTTTTCAATCTGAAAGCATGTGAGAGTGTTTTCTAGTCACCAATGGCTGCCTTCAGGGAGAAGCCCTTTATAGTCTTACCAACATGAGTGAAACATGAGTGAAAGGGGCACAGAGACCAGGCCTGCTCAGAGTCTCACAGGCTGCATCTGAAATGACAATCTATATCCTTTGTATACAGTTCACCACTAGTATGTAGCGTgctctatggggaatagggtgtcactcCCAGCAGCACCTCCAACACATGGGGTGTAATCATTCGTTCAAACAGTTGCAAAACTGAACCTTTTGGAACTAAAACAACAGTTTATATTGGACACTTTTAGctaggtccctccctgtttcgttgagtttgcttccgtttaagaaatgttttgcaacaaaaTCAgcataatgaatacacccctggccATGGTCTCCACACATGCTTAGCTTACCTACCTTTACCACTCCGCCTTCTGACCCATTCTCACATCACATTCTGGCTAGGCTAAGGCCAAGCAAAGGCATCCTCTCTCATCATCTGTTCCATATTCCAGTCCCAATTCCATTTCACATACAAAGAGCGTTTTACAGCATTCAAGTAGTCGGCACTCGGGGCAGTTGATTCAGTGACGGAGGATTTGCTCAGGAGTTGAGAGGTGAGTGAGGGATATTTCAAGCCAGTGGTGCCATGGAGGCTACTGAAACTGCTCCTACACTAAAATGAGGACAGTACAGATACTGGATGTATGCAGTGTGGCTCACAGGTTCTATGGAGGCAGAGGCAAATAAATTGTCCTTCTGAAATATCCACTATGTATGGAACTCGTTCCAAAAACTGTCACAATTGTAAGTAGGCAGAGGGGAAATTTGATAAAAGAAACTCCCCGAAAGCTCAATCCAGTACTACATTTGTCTCCACAAGAAAGCACATAACATTGTCCCCCATATCACATCTCGGCTAAGTCAAACAAGTGGTTTCAGCatcttaaaaataataataacatgacTTAAAAATAAAGGCAAATCGGATGTAAGCAAAGAGCGATAAAGAGAGGTAGCCCTGTCCTCTAGTGGTCAACTACAGTTAATGCTCAACTACAGCAACTAGAAACTGCAATGATGAGGGTGAATTATTTTCTTTGAAAAACAAGTCTTTACAGAAAGCAGTCTTTACAAAATCTCTGTGTCATTGGAGCACACGCCTTCTCTGGTGCGTCCTGGGAGTAAAAAATAACCGGGCTATCCCCCCAAGTCCACTTGATGCAGTGGTTCGGCCCCCGTTATCCCAAAAGCTCTTAAAGGTTCTCTTCACCATAAAGCAAGCTCCTCTGTGTATAAAAATAAGAAGGAAGTGGACATTCAGTTCTcgtgtggttttgtctggatcggaggtcacagtcctgtctgtctcgcTCTACGCTGTCACCTCTCGGATGATGATCATATCCACAGTGGTGGGAAACGTCTTCAGCAGGGCTACGGCGTTCCCGTGGTCAATGTTCACAAAGCTGTA

Function

NR:

description
hypothetical protein cypCar_00013778, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU433169 True 3230 lncRNA 0.39 2 24507603 24510871

Neighbor

gene id symbol gene type direction distance location
LOC110523479 srek1 coding upstream 33998 24432802 ~ 24528819 (+)
zmp:0000000846 LOC106567724 coding upstream 425649 24040145 ~ 24081954 (+)
LOC110523473 LOC106567744 coding upstream 577938 23906231 ~ 23929665 (+)
LOC110523472 gramd3 coding upstream 601602 23896074 ~ 23906001 (+)
oclna ocln coding upstream 624262 23873604 ~ 23883341 (+)
LOC110523483 LOC106567618 coding downstream 124832 24635703 ~ 24644012 (+)
trnaa-ugc-9 NA coding downstream 193844 24704715 ~ 24704786 (+)
trnaa-ugc-10 NA coding downstream 208489 24719360 ~ 24719431 (+)
aqp3b LOC106567539 coding downstream 908834 25419705 ~ 25424226 (+)
LOC110523493 LOC106567525 coding downstream 963042 25473913 ~ 25482789 (+)
G381115 NA non-coding upstream 7391 24465113 ~ 24500212 (+)
G381072 NA non-coding upstream 111110 24396239 ~ 24396493 (+)
G381071 NA non-coding upstream 111510 24395801 ~ 24396093 (+)
G381069 NA non-coding upstream 114388 24392946 ~ 24393215 (+)
G381067 NA non-coding upstream 116904 24390268 ~ 24390699 (+)
G381174 NA non-coding downstream 62599 24573470 ~ 24612439 (+)
G381191 NA non-coding downstream 133257 24644128 ~ 24644859 (+)
G381190 NA non-coding downstream 134146 24645017 ~ 24645870 (+)
G381234 NA non-coding downstream 168579 24679450 ~ 24679698 (+)
G381305 NA non-coding downstream 306515 24817386 ~ 24888977 (+)
LOC110523468 vamp5 other upstream 663258 23838502 ~ 23844345 (+)
G380340 NA other upstream 766144 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 870512 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 1500316 22942205 ~ 23007315 (+)
G378868 NA other upstream 1877934 22602110 ~ 22629669 (+)
G381239 NA other downstream 176868 24687739 ~ 24776429 (+)
G382186 NA other downstream 714571 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 1664074 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 1926748 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2150967 26661838 ~ 26663613 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location