G381190


Basic Information

Item Value
gene id G381190
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 24645017 ~ 24645870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU433259
agtaaaaataaagaaaaatcctggaatgagtaggtgtgtccaaactttggacagGCACTGTACATGACAGGCAATTAGAACTGTATTGTGTATAACAGATCCATCTTCACGTTCTGTAACATTGCTCCTTTCAGAACTGACCCCAGGATTTGACTTAAAATTGCTTTCAGTAATTGTATTGACAGAAAGGGAGTTAAGGAAGGAGTGAAAGGGAGGAATGAATTAAGgaaggagagaaatggaggaagGGGTTGTTCAGGAAGGAGTGAAAGGGATAAAGGATGCATCTGTGAAATATTTGAATTGGGAGCACATTCCTTTTTCTCATGACTACATGAGTTACACACGACAGCAGGGTTACATTGTTTCTATCCTATCATGTTCAGACAGTTATTTTTGTACCAAATGATTTGTTATAGTTACTGTTGGATGAAACAAAGACCCTAAGCCTTGATCATGTGGATCTCTATCATTGCTTTGAATAGCAATTATCAGGCTGCTAATTTGAAGATAAAAGAAAGTATGTCCTTGAAAGTATGTATAGTGACCATGTCTGCACCCCCTACCCTCACGCTGTATTTACTAATGATTGGAACCATAGCAAACACACAAATATGTCAATGCCATTTCTCTTTGGATTCTATTTCATTTGACATCACTAAAACAATGTTGATAGTATGGGACTTATTCCGCCTTATTGATTTTGCATGCGGTTCCATCTGATATTTATTGTCAGACACTTAATTGAAGCTAATGAATATTGTGTAAAACAGAGCAGCATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU433259 True 784 lncRNA 0.37 2 24645017 24645870
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523483 LOC106567618 coding upstream 1005 24635703 ~ 24644012 (+)
LOC110523479 srek1 coding upstream 171412 24432802 ~ 24528819 (+)
zmp:0000000846 LOC106567724 coding upstream 563063 24040145 ~ 24081954 (+)
LOC110523473 LOC106567744 coding upstream 715352 23906231 ~ 23929665 (+)
LOC110523472 gramd3 coding upstream 739016 23896074 ~ 23906001 (+)
trnaa-ugc-9 NA coding downstream 58845 24704715 ~ 24704786 (+)
trnaa-ugc-10 NA coding downstream 73490 24719360 ~ 24719431 (+)
aqp3b LOC106567539 coding downstream 773835 25419705 ~ 25424226 (+)
LOC110523493 LOC106567525 coding downstream 828043 25473913 ~ 25482789 (+)
LOC110523494 NA coding downstream 883039 25528909 ~ 25561013 (+)
G381191 NA non-coding upstream 158 24644128 ~ 24644859 (+)
G381174 NA non-coding upstream 32578 24573470 ~ 24612439 (+)
G381104 NA non-coding upstream 134146 24507603 ~ 24510871 (+)
G381115 NA non-coding upstream 144805 24465113 ~ 24500212 (+)
G381234 NA non-coding downstream 33580 24679450 ~ 24679698 (+)
G381305 NA non-coding downstream 171516 24817386 ~ 24888977 (+)
G381396 NA non-coding downstream 282339 24928209 ~ 24930197 (+)
G381505 NA non-coding downstream 437497 25083367 ~ 25124168 (+)
G382117 NA non-coding downstream 527605 25173475 ~ 25173703 (+)
LOC110523468 vamp5 other upstream 800672 23838502 ~ 23844345 (+)
G380340 NA other upstream 903558 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 1007926 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 1637730 22942205 ~ 23007315 (+)
G378868 NA other upstream 2015348 22602110 ~ 22629669 (+)
G381239 NA other downstream 41869 24687739 ~ 24776429 (+)
G382186 NA other downstream 579572 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 1529075 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 1791749 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2015968 26661838 ~ 26663613 (+)

Expression

G381190 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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G381190 Expression in each Bioproject

Bar chart with 12 bars.
G381190 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Co-expression Network