G382117


Basic Information

Item Value
gene id G382117
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25173475 ~ 25173703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU434252
GTCAGAAGACTTTCCTACCAGTTTGCTGTGGTACACGAGCTGAAATTCGCACCAATGTGGGCAGAAAAAGAAAAGGCCAGCTCGGAGTGGTTTACAGGCTTCTTAAAGCAGCACCCAAAGAAAGAGAAAGCCAGAGGCAACTACCCTTGCCAGGGCAAGTAGCTTCAACAGACAAAATGTTAATACTTTCTTTGACAATGTAGCAGAAGTGCTACAGAGATATCAATTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106935542

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU434252 True 229 lncRNA 0.44 1 25173475 25173703

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-10 NA coding upstream 454044 24719360 ~ 24719431 (+)
trnaa-ugc-9 NA coding upstream 468689 24704715 ~ 24704786 (+)
LOC110523483 LOC106567618 coding upstream 529463 24635703 ~ 24644012 (+)
LOC110523479 srek1 coding upstream 699870 24432802 ~ 24528819 (+)
zmp:0000000846 LOC106567724 coding upstream 1091521 24040145 ~ 24081954 (+)
aqp3b LOC106567539 coding downstream 246002 25419705 ~ 25424226 (+)
LOC110523493 LOC106567525 coding downstream 300210 25473913 ~ 25482789 (+)
LOC110523494 NA coding downstream 355206 25528909 ~ 25561013 (+)
cacna1b cacna1b coding downstream 499197 25672900 ~ 25793763 (+)
LOC110523500 LOC106567252 coding downstream 696040 25869743 ~ 25938520 (+)
G381505 NA non-coding upstream 49307 25083367 ~ 25124168 (+)
G381396 NA non-coding upstream 243278 24928209 ~ 24930197 (+)
G381305 NA non-coding upstream 284498 24817386 ~ 24888977 (+)
G381234 NA non-coding upstream 493777 24679450 ~ 24679698 (+)
G381190 NA non-coding upstream 527605 24645017 ~ 24645870 (+)
G382118 NA non-coding downstream 842 25174545 ~ 25174812 (+)
G382174 NA non-coding downstream 43410 25217113 ~ 25217367 (+)
G382194 NA non-coding downstream 56849 25230552 ~ 25230781 (+)
G382247 NA non-coding downstream 92949 25266652 ~ 25266860 (+)
G382305 NA non-coding downstream 129276 25302979 ~ 25303211 (+)
G381239 NA other upstream 397046 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 1329130 23838502 ~ 23844345 (+)
G380340 NA other upstream 1432016 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 1536384 23623921 ~ 23678038 (+)
lhfpl2a lhfpl2 other upstream 2166188 22942205 ~ 23007315 (+)
G382186 NA other downstream 51739 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 1001242 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 1263916 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 1488135 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 2501649 27675352 ~ 27719165 (+)

Expression


Co-expression Network