G382476


Basic Information

Item Value
gene id G382476
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25435538 ~ 25435807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU434623
GCATTGCAGCTTCCGGATTCATTTCCAAAAATACATGTCTAGAGCTTGTTTTAGAAATGCATTCAATAATGACATTATACCAATAGATGACGTAGTATAGGCTTGGGTCTTCAGAAAATGACTTGTGTGAGAATGATAGACACAGAAGGGCCTTGTCTTGAATAACGACCTATGCTGCAAATTAAATCTGATTTAGGCCTATTCCGCTATCTAAATATGCCATGCTGTTCTGTGTTATTTAATGGCCATATAATTGCATAAATAATgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU434623 True 270 lncRNA 0.36 1 25435538 25435807

Neighbor

gene id symbol gene type direction distance location
aqp3b LOC106567539 coding upstream 11312 25419705 ~ 25424226 (+)
trnaa-ugc-10 NA coding upstream 716107 24719360 ~ 24719431 (+)
trnaa-ugc-9 NA coding upstream 730752 24704715 ~ 24704786 (+)
LOC110523483 LOC106567618 coding upstream 791526 24635703 ~ 24644012 (+)
LOC110523479 srek1 coding upstream 961933 24432802 ~ 24528819 (+)
LOC110523493 LOC106567525 coding downstream 38106 25473913 ~ 25482789 (+)
LOC110523494 NA coding downstream 93102 25528909 ~ 25561013 (+)
cacna1b cacna1b coding downstream 237093 25672900 ~ 25793763 (+)
LOC110523500 LOC106567252 coding downstream 433936 25869743 ~ 25938520 (+)
LOC110522854 LOC106563131 coding downstream 516287 25952094 ~ 25955508 (+)
G382341 NA non-coding upstream 97203 25338105 ~ 25338335 (+)
G382340 NA non-coding upstream 98651 25336547 ~ 25336887 (+)
G382315 NA non-coding upstream 123712 25311339 ~ 25311826 (+)
G382311 NA non-coding upstream 125258 25307974 ~ 25310280 (+)
G382307 NA non-coding upstream 130028 25305293 ~ 25305510 (+)
G382478 NA non-coding downstream 6952 25442759 ~ 25449570 (+)
G382497 NA non-coding downstream 17065 25452872 ~ 25453094 (+)
G382504 NA non-coding downstream 21453 25457260 ~ 25457661 (+)
G382598 NA non-coding downstream 188306 25624113 ~ 25624865 (+)
G382186 NA other upstream 209808 25225442 ~ 25225730 (+)
G381239 NA other upstream 659109 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 1591193 23838502 ~ 23844345 (+)
G380340 NA other upstream 1694079 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 1798447 23623921 ~ 23678038 (+)
LOC110523503 NA other downstream 739138 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 1001812 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 1226031 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 2239545 27675352 ~ 27719165 (+)
G385053 NA other downstream 2270907 27706714 ~ 27707078 (+)

Expression


Co-expression Network