G382670


Basic Information

Item Value
gene id G382670
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25775600 ~ 25775817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU434832
CTTTAATTAGTCCTATAGAAGAGTAATACAATTAAAAACACAACCTTTCCCCTCTAGTCTTCTCCATTCTCATACTCTATGGGCTGTTCTGTGTTGTGTGGCAGCATTTAGAGAGCTTGTATTGTGGACCAAGGTAACGATTGTTCAGTACTCAGGTGTTTGCCACTGTCAGTGGTTCCAGCATGTACACAGCTGTCTAGATGAATCATTGTTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU434832 True 218 lncRNA 0.40 1 25775600 25775817

Neighbor

gene id symbol gene type direction distance location
LOC110523494 NA coding upstream 214587 25528909 ~ 25561013 (+)
LOC110523493 LOC106567525 coding upstream 292811 25473913 ~ 25482789 (+)
aqp3b LOC106567539 coding upstream 351374 25419705 ~ 25424226 (+)
trnaa-ugc-10 NA coding upstream 1056169 24719360 ~ 24719431 (+)
trnaa-ugc-9 NA coding upstream 1070814 24704715 ~ 24704786 (+)
LOC110523500 LOC106567252 coding downstream 93926 25869743 ~ 25938520 (+)
LOC110522854 LOC106563131 coding downstream 176277 25952094 ~ 25955508 (+)
whrna LOC106567256 coding downstream 219831 25995648 ~ 26149621 (+)
LOC118964579 LOC106567353 coding downstream 386266 26162083 ~ 26166903 (+)
LOC110523503 NA coding downstream 399067 26174884 ~ 26186710 (+)
G382598 NA non-coding upstream 150735 25624113 ~ 25624865 (+)
G382504 NA non-coding upstream 317939 25457260 ~ 25457661 (+)
G382497 NA non-coding upstream 322506 25452872 ~ 25453094 (+)
G382478 NA non-coding upstream 326030 25442759 ~ 25449570 (+)
G382673 NA non-coding downstream 6579 25782396 ~ 25782611 (+)
cacna1b cacna1b non-coding downstream 16967 25672900 ~ 25793763 (+)
G382652 NA non-coding downstream 18284 25794101 ~ 25795410 (+)
G382689 NA non-coding downstream 30920 25806737 ~ 25815563 (+)
G382795 NA non-coding downstream 204584 25980401 ~ 25980628 (+)
G382186 NA other upstream 549870 25225442 ~ 25225730 (+)
G381239 NA other upstream 999171 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 1931255 23838502 ~ 23844345 (+)
G380340 NA other upstream 2034141 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 2138509 23623921 ~ 23678038 (+)
LOC110522865 LOC106567246 other downstream 661802 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 886021 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1899535 27675352 ~ 27719165 (+)
G385053 NA other downstream 1930897 27706714 ~ 27707078 (+)

Expression


Co-expression Network