G383750


Basic Information

Item Value
gene id G383750
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26550456 ~ 26579192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU435993
GAATAGAATCATTCATTATGAGCTCCCGTTTTGTGAGAAGCTCTGTCATGCTATAACAATTCAATGGTATGTTTACAGTATGTTGGCATGCATTTGGGTAGAGGCCCCAACGTCTCACTACAATGGATGACATTGTGTGATATGGACAGTAAATGTAATCCTAGCCCTTTCTATAAAATAGGGCACAgattgtgatgaaacaaaaagcGAAGATTAAATATATGTATAAAAACAAATATCATACAGCATTCTGGGGGTAGAATTTAATTTAACCCTGTAGTCAAACCCAACCTCTTCTTCGATATGTTGTTCTTAGGAGAAGGGAGCACTTTCATGTGGAGGGGTGATAAAATATGGTTTGTCTTCGACATTTTCAACAGTTTAACTTAAACCCACGATGGTGGGTTATATCAGAACATATTTTGTACTATACAGTTTGACACAAAGAGAAAAGAGAACACTTTTAATTGTGAGCAGGGGCACAACCTTCACTGGGACCAGTCAGCCCCCACATTCTGAatttgcatttttgtcccccccagttttatcattggaatgtgatacaaaacgaggcaatgGTGCAGTGTgctgtgctttaggaccatgcggatacCTCCGAGCAGTTGGGTAGGccgtttggagtgtttatccatggatttaaaaaaaataaagatatgtaacccccacttctaaaaccaaagttgctcCCCTGATTGTGAATCATGACTGTGTTCATCCAGAattagaatatttttttttatttattttatttggacTGATCTTGTAATTTTCATCAGTATCTTATTCATAATTTAAATGTTACATTATTTTCAAAAGGGCCCCCCCTGAACATTTGACAAGATGGTTAGATCGCTATCTCACAAACAGGTACTTTTAtactacagttccttcagaaagtattcacagaaAGTACTTACttcttccatattttgttgttacagcctgaatttaaaacggATTAAATTGCGATTTATGGTCACTGACCTACAcccaataacccataatgtcaatgtggaattatgtttttcaaaagtttcaaatgaaaagctgaaatgttttgagtcaataagtattcaacccctttgttatggtaagcctaaagTTCAGGAGTAACAATTAGCTTAACAAGTCAGTCAAAATAAGTTGGATGGACTCATGCTGTGTGCAACAATAGTGTTTAAAATGATTTTTAATAACTACCTAATCTCTATACCCAACACATACCattatctgtaaggtcactcagtcgagcagtgaatttcaaacacaaagaccagggagattttccaatgccttgtaaagagcacctattggtagatgggtaaaaaaaataataataaaaaaaatatatataaatgaaatggagctaagcacaggcaaaatcctagaggaaaacctggttcagtctgctttccaccagacactgagtgatgaattcacctttcagcaggacaataacttaaaacacaaggcctgGAGAATCAATTATGGAGCTGTTTATcaagacagtgaatttttacaGTTGTGGCTTAAacctgcttgaaaatctatggtaaaACATGAAAATGGTTGtcgagcaatgatcaacaaccaatatgACAGAGCTTGAACATTTTTGTAAAGAATAATGGGCCAATActacaatccaggtgtacaacGCTCTTAGATGCTTACCCAGAAACTcagttgtaatcactgccaaaggtgattctagcaTGCATTGActgaagggtgtgaatacttatgtaaatgagctaTTTCTGtacttaattttcaatacatttgcgtacattttgtgtgtaaatgggtgagaaaaaaaactatttaattcatttttaattccagctgtaacacaacaaaatgtggaacaagtcaagaggtatgaatacttgaATACCACCGTAAGTGGTCAGCTATAGAGACCTCCTCACTCAGATACCATCGAACACAGCATACATGACAGGCTGACTGAGGGTCCAGCATTGCAACGGagtgcatagtaagtcttaaaaAACACAACATACCGTGTTTTCACATACAGCAGTGACATGCAAGAAAATGACACTTTGGTGCTGAAATAATCACTATGTGGAAGCATTCATTGTTGAATTACTGTTGTTTCAATAATATCTTATGGAATCATAAACATGTTCAGTGACTGAAGTGATCTGTACACCAACATTGTCTAACTATATGCAAAACGGGGCAAAATGTTAAAAACACATGCCACTAGAGAACTGGGGAGATTATTCCACCACTTTGGGCTCATCTAAAAATGGAGAAAAAGCAGAGAATTTAAAAAGATTGCACTCTACTGGCAATGTCGAAGTTCTACCATCTCATTTGTATCTTACCATATCTGATGACAACTTTATCCATGTCAAACTAATTCCAACATTTCCATAAGGGATATGTCATGCATAGATTGTACAAGAGGTCTGCAGCCGCACTAGGCTATACGCTTGGTATTAAAATTCATTTGTAAGTGCCAGTAATTCATACAATTTCACAATGACATTGCAATGCACTTATTTAAAAGGTGTTTGTTTCTCTATGAATGATATTACTTTACAAAATATGATAACCATTTCCTTTTTGGTGTTCTGAAAATGAGATCTGTAAATCTATTACCATATAAAAAGAAACAAACGTGATTTTGATTTCAGCTTCAACACTGTATCATCCCCTTTGCTAAACACATATATTAGAAACATTTAGTTACATTACGTTTTTAAAAGCTCTTCACCAGTTGTGGTAACTGGGAGACATTTTACAATGAATCATTTGTGAGGACTTAATAAAACAAATAGATTGTTCAGCAACAACTAATTCTATTAATGTGCAACTTGTtgcttctacatctgcattgcttgctgtttggggttttaggctggatttctgtatatcactttgtgacattggctgatgttaaaagggcttcataaatacatatGATTGATTgagtgatgtgaatcacactgctgctctcttatTTAGCTATTTGCATCGtaatggttgttgtggatggctgttcacaaatctaaatgtgtatttcaaCCCAATAAtagttgaattcaagaagtttaagctgcctatcaattgttgttcagagtttgtactgttaggtgacctaaactgggatatgcgtAACACCCCgtccgtcctacaatctaagctagatgccctcaattttacacaaattatcaaggtACCTACCagatacaaccctaaatccgtaaacatgggtaccctcttagatatcatcctgaccaacttgccctctaaatacacctctgctgttttcaaccaggatctcagcgataaCTGCTTCaatgcctgcatccgtaatgggtccgcgatCAAACGACcagccctcatcactgtcaaacgctcgcTAAAACACTTCAGTcgagtgtaacagtataactttagaccgtcccctcgcccatacccgggcgtgaaccagggaccctcagcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaaccactacttcaaggtctcagagcaagtgacgtcaccgattgaaatgctattagcgagcaccaccgctaactagctagccatttcacatccgttacacgagcaggcctttctaatcaacctggccctggtatcctggaaggatattgacctcatcccgtcagtagaggatgcctggttactctttaaaagtgctttcctcgccatcttaaataagcatgccccattcaaaaaatgtagaactaagaacaggtatggcccttggttcaccccagacttgactgcccttgaccagcacaaaaacataatGTGGCGttctgcactagcatcgaatagccccctcgatatgcaactttttagggaagtcaggaaccaatatacacagtcagttaggaaagctaaggctagctttttcaaacagaaatttgcatcttgtagcactaattccaaaaagttttgggacactaaagtccatggagaataagagcacctcctcccagctgcccactgcactgaggctaggaaacgctgtcaccaccgataaatctacgataatcgataatttcaataagcatttttctacagctggccatgctttccacctggctactcctaccccggccaacagctctgcaccccctgcagcaacttgtcCAAGCCCCCCAcccccttcacccaaatccagacagctgatgttctgaaagagctgcaaaatctggatccctacaaatcagctgggctagataatctggaccccctctttctaaaattatccgtcgaaattgttgcaacccctattactagcctgttcaacctctctttcgcatCGTCTGAGAtctccaaagattggaaagctgccccggtcacccccctcttcaaagggggagacatttatcttcttgctcttttgcaccccagtatccctacttgcacattatctgcacatctatcactccagtgttaatgctaaattgtaattatttggcctctatggcctatttattgggggtcatatttaggcagccttttcccacatTGTGGGATATTgattttgtattgttgcttttgagCCCTACAAAGCTGGACGTTTCGTTTTGTTACGCTTTAtttgttttgttgctggttcacatGAATAAATCTGATGAACGccttccacgctgcaccttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435993 True 4741 lncRNA 0.40 2 26550456 26579192

Neighbor

gene id symbol gene type direction distance location
LOC110522865 LOC106567246 coding upstream 48172 26437517 ~ 26502284 (+)
pnpla7a NA coding upstream 153003 26393838 ~ 26397453 (+)
LOC110522858 LOC106563124 coding upstream 163786 26385129 ~ 26386670 (+)
LOC110523509 LOC106567323 coding upstream 180655 26365281 ~ 26369801 (+)
LOC110523508 LOC106567317 coding upstream 198508 26313498 ~ 26351948 (+)
pus1 pus1 coding downstream 274879 26854071 ~ 26877217 (+)
noc4l noc4l coding downstream 298324 26877516 ~ 26884592 (+)
LOC110523521 vps29 coding downstream 305695 26884887 ~ 26887645 (+)
atpbb LOC106566318 coding downstream 310782 26889974 ~ 26892420 (+)
LOC110523522 arpc3 coding downstream 313280 26892472 ~ 26895096 (+)
G383723 NA non-coding upstream 30285 26518198 ~ 26520171 (+)
G383082 NA non-coding upstream 67960 26476116 ~ 26482496 (+)
G383018 NA non-coding upstream 102940 26360977 ~ 26447516 (+)
G382925 NA non-coding upstream 350582 26191034 ~ 26199874 (+)
G382815 NA non-coding upstream 382308 26167202 ~ 26168148 (+)
G383755 NA non-coding downstream 1055 26580247 ~ 26580534 (+)
G383758 NA non-coding downstream 5377 26584569 ~ 26584974 (+)
G383752 NA non-coding downstream 14352 26593544 ~ 26630324 (+)
G383774 NA non-coding downstream 46799 26625991 ~ 26629585 (+)
G383778 NA non-coding downstream 55521 26634713 ~ 26635125 (+)
LOC110523503 NA other upstream 363766 26174884 ~ 26186710 (+)
G382186 NA other upstream 1324726 25225442 ~ 25225730 (+)
G381239 NA other upstream 1774027 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 2706111 23838502 ~ 23844345 (+)
G383794 LOC106566282 other downstream 82646 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1096160 27675352 ~ 27719165 (+)
G385053 NA other downstream 1127522 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1325275 27904467 ~ 27904731 (+)
G385805 NA other downstream 1837413 28416605 ~ 28417555 (+)

Expression


Co-expression Network