G383895


Basic Information

Item Value
gene id G383895
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26901788 ~ 26905762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU436157
CACAATTTTATTATTTTAAACCAAAAAATGATACATCACACAGACATTTAAATGTGTATAGTTTTTAAAAATCTTTGACAGGCTTAAGTGTACAACAGTCAGagatatacagtgagctccaaaagtacagtgacactgttgttgttttggctctgtactccagaacTTTGGAtgtgaaatgatacaatgactgaggttaaagtgcagactgtcagcttccATTTGAGGGTATttaaccatttagaaattacagcactttttgtacattgtCTCCCccttttaggggaccaaaagtattgggacaaattgaCTTATGTGTATTGAAGtagtcaaaagtgtagtatttggtcccatatttctcgaacgcaatgattacatcaagcttgtgactctacaaacttgtgcATTTGTCgtttgattattttgtgcccaatagaaattcatGGTAAATGATGTATTGTGTAATTTGAGTGACTTTTATTTGATATTTGTGCTTCTGTAACTTTCCCACGCATCATTATTCAGGAGTATTCATAATCATAGTAGCATCCatatgaatgtagaagtgttcagaacatattatattcttatttacaataaaagtgactccaaaatgacaataccATTTCTATCAGGCACAAAATAATCAAactcaaccaaaacaaacagcaaatgcatccaacaagtttgtagactCACACACGTAATCCCGGTgtactaggaatatgggaccaaataacaaaacatttgactactttaatatacGTATatgtggcaccttcattggggatatagatgaaaataccttcaaattaaagctgacagtctgcactttaacctcatagtcattgtataatttcaaatccaaagtgctggagcacagtcaaaaaaagtgtcaaacccCAATAATTTTGGAGCTCACTGGAACTCTTGAACTAAAATCTAGAATTTACTGGGATTGTTCTAATACTATTCTTTTGAAAGATGTtttgaaaggtgtgtgtgtgtgtgggggggggggggattctatCCATGCTTTGTAATATAAACACATTCAGAGCAataacatacttttttttttgatACAGAGTCTGAGATAGTAAGGTAAATTAGCAGTGTGGAACAAACTTGCAGGTATACTGCATTTATAAAGCATAGAAGCAAAACTGCAAACCTCTCAGGTTGTATGGCAAAACCTTGTATTTTCAGTGATATCCCTTATGGAAGTGGGCATGTATTTTTAGTGTCACCTAAGCATTGGCGTGCAGATCAAGCTTTTACGTCATGGGCTTTTCAATTAACCACCTAAGTTGTAATTCTTCTACAGAGTGATTTATTTGCCATTTATGTGGCTTTAGGCTACTAATTGTAAGAAACAAAAGAAAAAAGTGACACATGCATAAAAAGCTTAAAGGTCTACCATTGCCTTGCTACCAGCCACTCGTTGAACATTTCCCACTTTACACTAGCTGATCCGTAGGAATCACACTGGCTGACAAGAAGCATACGGGTCACTAGACATGACATAATCATCTGGAATGTGTATAATATAAACTAGACATTAATGCATTGACATACGCTCTATGCAAATGAAACATTTCAGAGTAAGAAAAAAATAGACTTTTTACTGACTGGCCAGAAAGCATCTATGGGGAAACCAAAATATTCAGACAATCTTCACAGGGGAAAATGCTCCCTTCCTCATACTGCTCTACCCATGACGAACAAGGCGGTCAGGTAGGATCCATAGCTCAATATGCAACAGAGCTGCAGGACTGCTCTCGCACGGAACACGCAAGCTTCTTGGAGTGGGTAGAAGTCGCTTCTAACCACTGGTCCATTGCACCGTCAGATATATGGTCAGATGTTTTATCTACCCACAAATTGTTATTGCTGGGGTTACAATGATGTGGTCCTAGAGCTGTGGTTAGGGAAACATCCACCCACCTCAAGCAAAACTCTTCCCAGCAAATATCCATTGAACAACTGATACACTACAATTCCATAAACTCCAAGCATCAAGTCCTCATTTTGGCTACTGTGAAATGAAACAAACACACTCCATACAACAAATATTTTTTCAGTGTACAAATGTAGCAGTTTCTTTTTTAGGAGGGGGGGGGTCTTCTTCTCAAAGGCACCTTTCAAAATGTAATAGCTTATGACACTTCCCTGTCAAGATTCAGACACCCATCATACATCTGACTATGAATAAACCTAAAACAAAACCGCCTAAAACTACAATAAAACCCATAGAAATTATTCTATATAAACTGAAATCTCTCCTAATATGTACATGAAAAACTGAACATATAATGTTTCATGTACATCTTATAAGTCACCTTCACTCTTCTTTCTGTACAGTACTGATAAACCTCAACACAGTGCTATAACACCAGTAATCAATCACTGGTGTAGTTCAGTCACAGGGGCTGCTACTCTACTGCCAACATGTCTTACAAACTGATTGTGATTGCTGTACTCCGAAAAGAAGTTTGAATGGGAAAATATGCAATAAATAAAGCTCAACTAAATCTCACGTGTCTGGTCAGAGATCAGTGCAAATTAGTTTATTTTTCAATTCGGGCAATATTCATTTGTCTGATTGGTCTACAAAGTGCTATTCCTGGCCTATACTGgataaaataacaatatttgcTACAAACTTCAGGAAATATTAATAAGATGATCCATCTCAAGCACTCAGACTAAAAAAGCTCAATGGGGTTTATGCAGTTCCAGCTGTTCTTCCACCATGGCAGCCATTTCACTTTGGTCAAAAGGAAATGCGCAGTGAGGTCCATTTCCTGTCAAGGCCCAGAAGTGGCACATACAGCAATCCTCTCTACATTCTCCTGTTTATGGTCAAAAAAATCTATCTGCTGGGTCCAAAAGGGCAACATTGTCATTCTTAATACGGCAAACTTAGCATCGACAAATTATCACAGACAGCGATGAATAAAGTACAATACTTCTGTAACAGCACCTTTATATGGTTCTATCACAGGAATGTACATTAAGCTGGGTCAATAACAACACACAACATTTTTTTCGCCACACACAGGCCTGTGGGCTGTGACAGGCCATACAATTGTGTTAACGCTCTTAAAAACTCTTCTGGTTTCCTCGAAAACGACAAATAAAATCTAAATCAATGTAAACCATCAAAGAAACCAAAAAGAGGAAAACAGACAAGTTAAGCCCACTCGCTATAATATCAGGCTATACTATTGTCCACAAATCACCATTACAAGCCAAACTAAAAATAGCACAATGCCCCGCGTAGGGGTTGAGATTCATATTTTTCACACAGAGTGGCTTCTTATAGAGTGATACCTCACGTCTTAAGAGAAGTGAGGGTCTATTTGTGATTGCTTAGCGCTGAATTATTGACAGAATCAAATGGAGCGTGTCTGTGACTGCAGTAGAATCCTCCGGCAGACTGCTTGGCTGTGATTGCTCAGGGCAGCGTTACTGACGGTAAGAGGCTGTGTGTATGGGACACTGCACAGAAATGAATAGCTAACACACTCAGTCCGTGTAGTGGGGTCCTGTCTGACACACGGAGGAGTGTGTAGTGGCCTTCTCACAAGCCCTTCATCTCCAACATCAACCAGGCGGTCACAGGCTCCACTGTGAGTATGAGAGACCAGCGTCACCAGTCCCAAGCATACCCAGTCCAGGCCCTTCATAACACACCCCCTGCCCCCACCACTGGCTGGTATCTCCATGGAAactagagggtggagggaggataCTGAGTTGGTAGGGAGGAAGTCAGATTGAATGGGCATGGTGGTGTCTGTCCAGAATGACTGACATCATAGTTTAGCAGCATCCACGGGTGCTGAGCAGAGTCCTCAGATGCAGAGCCCTGACTGTAGTGCTGTGAGGCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436157 True 3898 lncRNA 0.40 2 26901788 26905762

Neighbor

gene id symbol gene type direction distance location
LOC110523522 arpc3 coding upstream 6692 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 9368 26889974 ~ 26892420 (+)
LOC110523521 vps29 coding upstream 14143 26884887 ~ 26887645 (+)
noc4l noc4l coding upstream 17196 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 24571 26854071 ~ 26877217 (+)
LOC110523526 LOC106566370 coding downstream 679843 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 705995 27611757 ~ 27613814 (+)
LOC110523527 LOC106567169 coding downstream 753382 27659144 ~ 27664034 (+)
LOC110522888 LOC106566402 coding downstream 769600 27675352 ~ 27719165 (+)
LOC118964522 NA coding downstream 830116 27735878 ~ 27741089 (+)
G383936 NA non-coding upstream 36168 26865340 ~ 26865620 (+)
G383931 NA non-coding upstream 42576 26858845 ~ 26859212 (+)
G383886 LOC105014832 non-coding upstream 85601 26810795 ~ 26816187 (+)
G383792 NA non-coding upstream 241124 26658660 ~ 26660664 (+)
G383791 LOC106566282 non-coding upstream 243638 26657866 ~ 26658150 (+)
G383971 NA non-coding downstream 50826 26956588 ~ 26957041 (+)
G384003 NA non-coding downstream 97812 27003574 ~ 27004136 (+)
G384058 NA non-coding downstream 174700 27080462 ~ 27080702 (+)
G384073 NA non-coding downstream 203038 27108800 ~ 27109029 (+)
G384074 NA non-coding downstream 205126 27110888 ~ 27111122 (+)
G383794 LOC106566282 other upstream 238175 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 441092 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 715098 26174884 ~ 26186710 (+)
G382186 NA other upstream 1676058 25225442 ~ 25225730 (+)
G381239 NA other upstream 2125359 24687739 ~ 24776429 (+)
G385053 NA other downstream 800952 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 998705 27904467 ~ 27904731 (+)
G385805 NA other downstream 1510843 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 2020515 28926263 ~ 28931410 (+)

Expression


Co-expression Network