G384080


Basic Information

Item Value
gene id G384080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27116768 ~ 27116996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU436344
cctacaacccgcctcacccaatgtggtactgatctgctattttctttactttagaaccggagcccccaacagaagctagccagctaactagctactaactagtagtcagctagccactgctagcggtcatcagctaacctttagccctgacaactcctgccagtctgGACAACGcgattcaacccagagcatatcggacttcTTCTCCTCCATAtatccggattcctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436344 True 229 lncRNA 0.50 1 27116768 27116996

Neighbor

gene id symbol gene type direction distance location
LOC110523522 arpc3 coding upstream 221672 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 224348 26889974 ~ 26892420 (+)
LOC110523521 vps29 coding upstream 229123 26884887 ~ 26887645 (+)
noc4l noc4l coding upstream 232176 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 239551 26854071 ~ 26877217 (+)
LOC110523526 LOC106566370 coding downstream 468609 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 494761 27611757 ~ 27613814 (+)
LOC110523527 LOC106567169 coding downstream 542148 27659144 ~ 27664034 (+)
LOC110522888 LOC106566402 coding downstream 558366 27675352 ~ 27719165 (+)
LOC118964522 NA coding downstream 618882 27735878 ~ 27741089 (+)
G384074 NA non-coding upstream 5646 27110888 ~ 27111122 (+)
G384073 NA non-coding upstream 7739 27108800 ~ 27109029 (+)
G384058 NA non-coding upstream 36066 27080462 ~ 27080702 (+)
G384003 NA non-coding upstream 112632 27003574 ~ 27004136 (+)
G383971 NA non-coding upstream 159727 26956588 ~ 26957041 (+)
G384087 NA non-coding downstream 8787 27125783 ~ 27126082 (+)
G384088 NA non-coding downstream 10201 27127197 ~ 27127406 (+)
G384090 NA non-coding downstream 15845 27132841 ~ 27133132 (+)
G384092 NA non-coding downstream 20534 27137530 ~ 27137733 (+)
G384200 sfswap non-coding downstream 145256 27262252 ~ 27266510 (+)
G383794 LOC106566282 other upstream 453155 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 656072 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 930078 26174884 ~ 26186710 (+)
G382186 NA other upstream 1891038 25225442 ~ 25225730 (+)
G381239 NA other upstream 2340339 24687739 ~ 24776429 (+)
G385053 NA other downstream 589718 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 787471 27904467 ~ 27904731 (+)
G385805 NA other downstream 1299609 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1809281 28926263 ~ 28931410 (+)

Expression


Co-expression Network