G384200 (sfswap)


Basic Information

Item Value
gene id G384200
gene name sfswap
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27262252 ~ 27266510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU436465
TGTAAGTCCTGCTTGTCGGAGGCAGAGGTATAGCGGCCCTCCTTCATGACCTTCAGGATGTGTTTGTAGTAGGGGTTCAGGTAGTGTTCGAAGTTCAGGAAGTCAAACTGGGAGTTGCCAGACTGCTTGGCTTTCAAAACAATCTCAAACTGGGCCCCCTGCAGGCACACAAAGTTGGCGGTCCTCTCAATGATGGCATGGGTTTTGGTGGTCGCTGGCAGCTCCACATCGGGGGGGATCGCCAGGCCCGGGGGTGCCACAAAGGGTTCCTCG

Function

symbol description
sfswap Predicted to enable RNA binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA processing. Orthologous to human SFSWAP (splicing factor SWAP).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436465 True 273 lncRNA 0.56 2 27262252 27266510

Neighbor

gene id symbol gene type direction distance location
LOC110523522 arpc3 coding upstream 367156 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 369832 26889974 ~ 26892420 (+)
LOC110523521 vps29 coding upstream 374607 26884887 ~ 26887645 (+)
noc4l noc4l coding upstream 377660 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 385035 26854071 ~ 26877217 (+)
LOC110523526 LOC106566370 coding downstream 319095 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 345247 27611757 ~ 27613814 (+)
LOC110523527 LOC106567169 coding downstream 392634 27659144 ~ 27664034 (+)
LOC110522888 LOC106566402 coding downstream 408852 27675352 ~ 27719165 (+)
LOC118964522 NA coding downstream 469368 27735878 ~ 27741089 (+)
G384092 NA non-coding upstream 124519 27137530 ~ 27137733 (+)
G384090 NA non-coding upstream 129120 27132841 ~ 27133132 (+)
G384088 NA non-coding upstream 134846 27127197 ~ 27127406 (+)
G384087 NA non-coding upstream 136170 27125783 ~ 27126082 (+)
G384080 NA non-coding upstream 145256 27116768 ~ 27116996 (+)
G384770 NA non-coding downstream 101947 27368457 ~ 27368693 (+)
G384773 NA non-coding downstream 104419 27370929 ~ 27371347 (+)
G384917 NA non-coding downstream 217844 27484354 ~ 27484556 (+)
G384972 NA non-coding downstream 282224 27548734 ~ 27678932 (+)
G385044 NA non-coding downstream 421645 27688155 ~ 27688671 (+)
G383794 LOC106566282 other upstream 598639 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 801556 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 1075562 26174884 ~ 26186710 (+)
G382186 NA other upstream 2036522 25225442 ~ 25225730 (+)
G381239 NA other upstream 2485823 24687739 ~ 24776429 (+)
G385053 NA other downstream 440204 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 637957 27904467 ~ 27904731 (+)
G385805 NA other downstream 1150095 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1659767 28926263 ~ 28931410 (+)

Expression


Co-expression Network