G385044


Basic Information

Item Value
gene id G385044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27688155 ~ 27688671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU437375
ccccaagaaccccccaatgcaccaacaaccaagagaatgaactaaagagaaaaaaggaaaagacagaagaaaacagcaatcaacaatgcaaaaaaatggACATCAatggacatcaaggacaactgaaatcataacagcaatgccaactttaaatgtttgtgtgcatgtctggcactattacctgtatgtgtgtgttcttgtatgtgtttatttgaatgagagtgtgtggaTATGCAtttgtacaaacacctgcacggcatcagcctcaggcaaacgagcattagttgtaaaaataatgccacttagtgtcattcaaatgtacttttattattttttattttgacttttttttctcctttatcttttgaccatcaatctctctcacatacagcaactccactcccacttgtctccaattccacataccaaccctcaccttccctcagcccatcccatctatctctgctggccacccacttcgtgtttctacgcaacacatatctttcaactatgctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437375 True 517 lncRNA 0.39 1 27688155 27688671

Neighbor

gene id symbol gene type direction distance location
LOC110523527 LOC106567169 coding upstream 24121 27659144 ~ 27664034 (+)
LOC110523526 LOC106566370 coding upstream 30849 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding upstream 74341 27611757 ~ 27613814 (+)
LOC110523522 arpc3 coding upstream 793059 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 795735 26889974 ~ 26892420 (+)
LOC118964522 NA coding downstream 47207 27735878 ~ 27741089 (+)
LOC110523528 nsma3 coding downstream 293974 27982645 ~ 27994423 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 319402 28008073 ~ 28016052 (+)
LOC110523531 LOC106566436 coding downstream 363950 28052621 ~ 28067973 (+)
LOC110523534 LOC106566461 coding downstream 421151 28109822 ~ 28112779 (+)
G384972 NA non-coding upstream 9223 27548734 ~ 27678932 (+)
G384917 NA non-coding upstream 203599 27484354 ~ 27484556 (+)
G384773 NA non-coding upstream 316808 27370929 ~ 27371347 (+)
G384770 NA non-coding upstream 319462 27368457 ~ 27368693 (+)
G384200 sfswap non-coding upstream 421645 27262252 ~ 27266510 (+)
G385139 NA non-coding downstream 168009 27856680 ~ 27856887 (+)
G385144 NA non-coding downstream 174619 27863290 ~ 27891266 (+)
G385172 LOC106566130 non-coding downstream 216374 27905045 ~ 27905332 (+)
G385182 NA non-coding downstream 231383 27920054 ~ 27920350 (+)
G385498 NA non-coding downstream 271533 27960204 ~ 27960582 (+)
LOC110522888 LOC106566402 other upstream 4762 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1024542 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1227459 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 1501465 26174884 ~ 26186710 (+)
G382186 NA other upstream 2462425 25225442 ~ 25225730 (+)
G385053 NA other downstream 18043 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 215796 27904467 ~ 27904731 (+)
G385805 NA other downstream 727934 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1237606 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 2053129 29741800 ~ 29763439 (+)

Expression


Co-expression Network