G385172 (LOC106566130)


Basic Information

Item Value
gene id G385172
gene name LOC106566130
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27905045 ~ 27905332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU437512
GTTGTAGGTGAaaagggatggagaagaggaggaggaggatgacagGGAGGTAAAAGAGGGTCCGTTGAAGGGTCCGGGGCTCTGTAGGAGCTCCAGGGGGATGGGTTGCTGGGCAGACATGGGTCCGTAGCTGGCGTTGATGAAGGGCATCTGGCGGGCCTCCTGGATGAAGAAGGGCTCAGTCCTGGCCTGCAGGCTGGAGTTCCTCATTAGGTCCTGGTTGGCCTCCTTTAGGAAGAAGGCTGCCTTGGCATTGAGTACCTGGTAGCTGACAGGCAGGTAGCCGGG

Function

NR:

description
PREDICTED: transmembrane protein 132C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437512 True 288 lncRNA 0.59 1 27905045 27905332

Neighbor

gene id symbol gene type direction distance location
LOC118964522 NA coding upstream 163956 27735878 ~ 27741089 (+)
LOC110522888 LOC106566402 coding upstream 185880 27675352 ~ 27719165 (+)
LOC110523527 LOC106567169 coding upstream 241011 27659144 ~ 27664034 (+)
LOC110523526 LOC106566370 coding upstream 247739 27585605 ~ 27657306 (+)
LOC110523528 nsma3 coding downstream 77313 27982645 ~ 27994423 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 102741 28008073 ~ 28016052 (+)
LOC110523531 LOC106566436 coding downstream 147289 28052621 ~ 28067973 (+)
LOC110523534 LOC106566461 coding downstream 204490 28109822 ~ 28112779 (+)
ftsj1 LOC106566467 coding downstream 322681 28228013 ~ 28235500 (+)
G385144 NA non-coding upstream 13779 27863290 ~ 27891266 (+)
G385139 NA non-coding upstream 48158 27856680 ~ 27856887 (+)
G385044 NA non-coding upstream 216374 27688155 ~ 27688671 (+)
G384972 NA non-coding upstream 226113 27548734 ~ 27678932 (+)
G384917 NA non-coding upstream 420489 27484354 ~ 27484556 (+)
G385182 NA non-coding downstream 14722 27920054 ~ 27920350 (+)
G385498 NA non-coding downstream 54872 27960204 ~ 27960582 (+)
G385499 NA non-coding downstream 55684 27961016 ~ 27961215 (+)
G385510 NA non-coding downstream 67657 27972989 ~ 27973303 (+)
G385512 NA non-coding downstream 68235 27973567 ~ 27973783 (+)
G385171 LOC106566130 other upstream 314 27904467 ~ 27904731 (+)
G385053 NA other upstream 197967 27706714 ~ 27707078 (+)
G383794 LOC106566282 other upstream 1241432 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1444349 26437517 ~ 26502284 (+)
G385805 NA other downstream 511273 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1020945 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1836468 29741800 ~ 29763439 (+)
G387516 NA other downstream 1991654 29896986 ~ 29898134 (+)
G388019 NA other downstream 2381619 30286951 ~ 30287824 (+)

Expression


Co-expression Network