G385510


Basic Information

Item Value
gene id G385510
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27972989 ~ 27973303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU437871
ctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggtgtcacgagtccgaccgagggtgtttccctttcccgggcaggtggcgctcggcggtcgtcctcactggcctattagctgccactgattgtttttccttcccctccttgtatgttgagtggtagcacctgtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437871 True 254 lncRNA 0.52 2 27972989 27973303

Neighbor

gene id symbol gene type direction distance location
LOC118964522 NA coding upstream 231900 27735878 ~ 27741089 (+)
LOC110522888 LOC106566402 coding upstream 253824 27675352 ~ 27719165 (+)
LOC110523527 LOC106567169 coding upstream 308955 27659144 ~ 27664034 (+)
LOC110523526 LOC106566370 coding upstream 315683 27585605 ~ 27657306 (+)
LOC110523528 nsma3 coding downstream 9342 27982645 ~ 27994423 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 34770 28008073 ~ 28016052 (+)
LOC110523531 LOC106566436 coding downstream 79318 28052621 ~ 28067973 (+)
LOC110523534 LOC106566461 coding downstream 136519 28109822 ~ 28112779 (+)
ftsj1 LOC106566467 coding downstream 254710 28228013 ~ 28235500 (+)
G385499 NA non-coding upstream 11774 27961016 ~ 27961215 (+)
G385498 NA non-coding upstream 12407 27960204 ~ 27960582 (+)
G385182 NA non-coding upstream 52639 27920054 ~ 27920350 (+)
G385172 LOC106566130 non-coding upstream 67657 27905045 ~ 27905332 (+)
G385144 NA non-coding upstream 81723 27863290 ~ 27891266 (+)
G385512 NA non-coding downstream 264 27973567 ~ 27973783 (+)
G385531 NA non-coding downstream 12153 27985456 ~ 27986156 (+)
G385543 NA non-coding downstream 116368 28089671 ~ 28093373 (+)
G385590 NA non-coding downstream 129925 28103228 ~ 28103605 (+)
G385592 NA non-coding downstream 135862 28109165 ~ 28109383 (+)
G385171 LOC106566130 other upstream 68258 27904467 ~ 27904731 (+)
G385053 NA other upstream 265911 27706714 ~ 27707078 (+)
G383794 LOC106566282 other upstream 1309376 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1512293 26437517 ~ 26502284 (+)
G385805 NA other downstream 443302 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 952974 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1768497 29741800 ~ 29763439 (+)
G387516 NA other downstream 1923683 29896986 ~ 29898134 (+)
G388019 NA other downstream 2313648 30286951 ~ 30287824 (+)

Expression


Co-expression Network