G386606


Basic Information

Item Value
gene id G386606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29070812 ~ 29073163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439069
TGAGAGCATAAAACAAAATGACTCCTGCAAGATCAGTGCGACTTCCTTGGTTAAATAAGACAAATAAATCAATGGCAAACTTAAACAGGTAACTAACTATATTAATCAGAATTGCTTTCCTTTAACACATGCATATAATTAACATTACACACTGCTGTTATATTTCTGTAACCTGCCCTTCAACAATACACCTACATATGACTCTACCATTAGTGACAAAAACATACATAATCTACATTAACACATCAAATGTCTTTGTATATTAGTTATAGCTGAATAATGACCAACAACAACAAGTGAAGGAGATGTCCTTAAATAATTCTCATCCACTCTACACAAGATAGATAAGGTTAACCTGTCACAAGTATGACATTCAAAAACACTTAATTGTTCTATTCAATACAATTATGCTGGCATAATAGTCTGCTAACTTACCATTTATTTATGCGCTAGCTCAGTATAAATACTAATCTTGAAATTTGAGATAAAATATGCATTTCGTATTTGAAAAGAGCAGGAGCTTTCTCAGCTTAGCCTATAACATATAGTTCATATAATTgttagttaATATATCTTAATTGGGTACATGTCTACTGTGGCGTACTCTTGTACACTACAGCTATATAGGCACTGTTCATCTACCTAGCTAACAGAACTAGACTAAAAAGTATACTGAGGAAAGATACGATGATCGGTTCATCTGAGCCTCGAGCGgatcaaatcaaaatctaattgtatttgtcacatgcgctgcatacagcaggtgtagaccttaccgtgaaatgcttacttacaagcctttactAACATTGCAGTTGAGAAAAATAattgttaagtaaaaaaaatatattttttaactaagagagcagcagtaaaataatagtAGCGAGGTACAAAATATGTTACAAATAACacgaaaacacacacaatagcacaattggttaaggGCCCGTAAAatcggcagccatctcctccggcgccattcaGTCAAAATGGCATATAATGCTCAAATTAAGTATTGCCCATGTCTGCCTGAAGCTCAGGATAATGCAGAGGATGTGGTGCCTTTGAAAGGTCAATTAAGAGGTGTCAAATTTGGTCCGCTTTGCAGCTATTTTGATAATTCTTTGCCATGCTTCGTAGAAGACATTAACTGTAACAAACTTGATACTGCTTCAATTACTTTAATTCAAGGTAAAGCCTGTTGTGCACATGCACAGTATTATGCACCCACCTTGTTCAATGATTTATTAGGCTTTAAGTACAGCGCATACAGCATGGATGTgagcagtggtgtgtattcatggatgccaaggagcatttggcctcccttgatttTTTCTATAAAATAGCCAATCaacgttgagctaaactgagtgagatcagctgtgaatggtcctggcacaccaaaaaaaaaaatctcaaggtaagccagtttggatttggcttcagaccaatcacatcacattagaAGCCAAACATCATTGACAGAAAACTTGAATTAATTGCATCCCATTGTGTCGTTGTCCcccagtggctagctagctaaaattgtcccatTCCTAAATTAGCAATGGATAGAGAATTGGACTTGTGGTTTACTTAATtatccgtactggccaatgattataatgggaattctgatccaaccataaattcattcATTGTGTACCTGGCccgagaggatggaagttcaacatgtagaaatgttaggctaatgttaactagctggcctggcgcATCATTGccaatgaaaggaagttaggctagtgaactagtattttagccaggtagccttggacaacaaaaaacattttttaaagtgtatgacagagtcatagatcGTTTAGGCAACAGGAAAGTgtaggatggcattggcgtttctagggtagggtgtagggtgagtcaacatgtttttctacttgcgGTATACTTGtggtatattttagttgtcactgtattagactaagaaTAGGTGATTAGataatgttgaaatggtgctggaatagtggaggcagctcctgttttctttgtgacttgcggtaactcagtggttctaaatcaatagttgtttcgTAGTCTGAAAAtgacagaaacattaacttgcttgatcatgctgtaggtcatgtaactgttacatgcaatatcttttgtggacttcaccagacagaggttgctctcctGTTTTGTGATGAAAAAAAgctgtggttgaatttattctgctactgtgtcttcttattgtctcggccttaggcctatatatatattacggtgtcaaggcatatgaactaacaggttatagagcaaacaacgcaatgaT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439069 True 2320 lncRNA 0.37 2 29070812 29073163

Neighbor

gene id symbol gene type direction distance location
LOC110522906 LOC106563306 coding upstream 3689 29061275 ~ 29067123 (+)
alad hem2 coding upstream 14870 29045103 ~ 29055942 (+)
ssna1 ssna1 coding upstream 61702 29004767 ~ 29009110 (+)
spag8 LOC106566715 coding upstream 139402 28926263 ~ 28931410 (+)
LOC110523559 LOC106566708 coding upstream 190669 28876573 ~ 28880143 (+)
coq4 coq4 coding downstream 16362 29089525 ~ 29097342 (+)
LOC110523572 zmynd19 coding downstream 43328 29116491 ~ 29121227 (+)
tmem141 tmem141 coding downstream 60681 29133844 ~ 29135483 (+)
LOC110523574 LOC106566787 coding downstream 67670 29140833 ~ 29166510 (+)
LOC110523576 LOC106563296 coding downstream 101156 29174319 ~ 29187968 (+)
G386568 LOC106566731 non-coding upstream 75689 28994145 ~ 28995123 (+)
G386537 NA non-coding upstream 105164 28961817 ~ 28965648 (+)
G386445 NA non-coding upstream 217661 28852880 ~ 28853151 (+)
G386065 NA non-coding upstream 300245 28756510 ~ 28770567 (+)
G386814 NA non-coding downstream 123724 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 123968 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 203638 29276801 ~ 29277657 (+)
G386918 NA non-coding downstream 222015 29295178 ~ 29295389 (+)
G385805 NA other upstream 653257 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1166081 27904467 ~ 27904731 (+)
G385053 NA other upstream 1363734 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1387419 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 668637 29741800 ~ 29763439 (+)
G387516 NA other downstream 823823 29896986 ~ 29898134 (+)
G388019 NA other downstream 1213788 30286951 ~ 30287824 (+)
G390184 NA other downstream 2887192 31960355 ~ 31960745 (+)
G390393 NA other downstream 3147018 32220181 ~ 32220533 (+)

Expression


Co-expression Network