G387150


Basic Information

Item Value
gene id G387150
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29486190 ~ 29486413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439684
gatgtggatgttgattaaggcagccccccgcacctttctgattcagaggggttgggttaaatgtggaagacacatttcagttgaatacattcagttggacaactgactatgtatccccttttccctttccctttcttccACTACCCCCACGGCAGGCCCTGGCTCCTCGCCCCTCTCAGACAGTTAATCTAGAACTGCCGGGGCCTctcagagaagagggagga

Function

NR:

description
gastrula zinc finger protein XlCGF52.1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439684 True 224 lncRNA 0.52 1 29486190 29486413

Neighbor

gene id symbol gene type direction distance location
LOC110523581 LOC106566935 coding upstream 40010 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 173862 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 223549 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 298222 29174319 ~ 29187968 (+)
LOC110523574 LOC106566787 coding upstream 319680 29140833 ~ 29166510 (+)
LOC110523583 LOC106566936 coding downstream 226515 29712928 ~ 30103090 (+)
tbx5a LOC106566939 coding downstream 255450 29741800 ~ 29763439 (+)
LOC110523590 rab14 coding downstream 373196 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 618880 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 647259 30133672 ~ 30217715 (+)
G387138 NA non-coding upstream 8308 29477487 ~ 29477882 (+)
G386998 NA non-coding upstream 67046 29418878 ~ 29419144 (+)
G386995 NA non-coding upstream 69488 29416469 ~ 29416702 (+)
G386990 NA non-coding upstream 72721 29413217 ~ 29413469 (+)
G387160 NA non-coding downstream 7161 29493574 ~ 29494193 (+)
G387161 NA non-coding downstream 7860 29494273 ~ 29494782 (+)
G387163 NA non-coding downstream 8522 29494935 ~ 29495355 (+)
G387167 NA non-coding downstream 13830 29500243 ~ 29500445 (+)
G387189 NA non-coding downstream 32830 29519243 ~ 29519539 (+)
spag8 LOC106566715 other upstream 555259 28926263 ~ 28931410 (+)
G385805 NA other upstream 1068635 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1581459 27904467 ~ 27904731 (+)
G385053 NA other upstream 1779112 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1802797 27675352 ~ 27719165 (+)
G387516 NA other downstream 410573 29896986 ~ 29898134 (+)
G388019 NA other downstream 800538 30286951 ~ 30287824 (+)
G390184 NA other downstream 2473942 31960355 ~ 31960745 (+)
G390393 NA other downstream 2733768 32220181 ~ 32220533 (+)

Expression


Co-expression Network