G387160


Basic Information

Item Value
gene id G387160
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29493574 ~ 29494193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439694
GTAATTGTAAGAAAATTAGTGATTTGCTGGGGCAGAGACTTTTTGGGAGCGCCGTCTGCCTTTCCACGCCACCTCAGAGGGAGTAGCTGGAGACGAGGTCTGGCAAGGTCGCACCGCCGTGAACAAAGGCTGTGTTAATCTGCTGCCACggctgctttgtgtgtgtgtacgcatacctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgcatacgCGCCGGTGTGTGCACCCGcgctctgtgtgtatgtgtgtatatgcacAGGGGGTGGGGGTCTGTAGGAACTATTAGTGTTAGATCCATAGAGGGAGTGTGATTCTGGTTTCAGTACACCTAAGGTCTGGATTTATTAAGAGCCGTTGGTGATTGGATGAGACATAAATGTTCCTGTAGCTCTCAGTGCTAATTCGTAACAGGGAAAGGGCTACCCAAAACACAGCAGGACGGTGAGAGTCTGAGacaatacacatacagtgccttcagaaagtattcacaccccttgactttttccacattttattttgttacagcctgaattaaaaatgtattcaactgagatgttgtgtcactggcctacacacaataccctatactGTCAAAGCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439694 True 620 lncRNA 0.48 1 29493574 29494193

Neighbor

gene id symbol gene type direction distance location
LOC110523581 LOC106566935 coding upstream 47394 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 181246 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 230933 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 305606 29174319 ~ 29187968 (+)
LOC110523574 LOC106566787 coding upstream 327064 29140833 ~ 29166510 (+)
LOC110523583 LOC106566936 coding downstream 218735 29712928 ~ 30103090 (+)
tbx5a LOC106566939 coding downstream 247670 29741800 ~ 29763439 (+)
LOC110523590 rab14 coding downstream 365416 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 611100 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 639479 30133672 ~ 30217715 (+)
G387150 NA non-coding upstream 7161 29486190 ~ 29486413 (+)
G387138 NA non-coding upstream 15692 29477487 ~ 29477882 (+)
G386998 NA non-coding upstream 74430 29418878 ~ 29419144 (+)
G386995 NA non-coding upstream 76872 29416469 ~ 29416702 (+)
G387161 NA non-coding downstream 80 29494273 ~ 29494782 (+)
G387163 NA non-coding downstream 742 29494935 ~ 29495355 (+)
G387167 NA non-coding downstream 6050 29500243 ~ 29500445 (+)
G387189 NA non-coding downstream 25050 29519243 ~ 29519539 (+)
G387368 NA non-coding downstream 176417 29670610 ~ 29670820 (+)
spag8 LOC106566715 other upstream 562643 28926263 ~ 28931410 (+)
G385805 NA other upstream 1076019 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1588843 27904467 ~ 27904731 (+)
G385053 NA other upstream 1786496 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1810181 27675352 ~ 27719165 (+)
G387516 NA other downstream 402793 29896986 ~ 29898134 (+)
G388019 NA other downstream 792758 30286951 ~ 30287824 (+)
G390184 NA other downstream 2466162 31960355 ~ 31960745 (+)
G390393 NA other downstream 2725988 32220181 ~ 32220533 (+)

Expression


Co-expression Network