G387161


Basic Information

Item Value
gene id G387161
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29494273 ~ 29494782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439695
TTGTTATGGCACGCCTAAATCAGTTCAGGagcaaaaatgtgcttaacaagtcacataataagttgcatggactcactgtgtgcgataatagtgtttaacatgatttttgaatgactaccccatctctgtaccccacacatacaattaaggtccctcagccgagcagtgaattttgaacacagattcaaccacaaagaccagggaggcttttcattgatagatgggtaaaaaaaaagcagacattgaatatccctttgagcatggcgaAGTTACTAATTACCctggatggtgtgtcaatacacccagttactacaaagatacaagcgtccttcctaactcagttgctggagaggaaggaaaccgctcagggatttcaccatgaggccaatggtgacttcaaAACAGTTACGGAGTtgaatgactgtgataggagaaaactgaggctggatccacaacattgtagttactccaaaatactaacctaattgacagagtgaaaaaatagaataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439695 True 510 lncRNA 0.41 1 29494273 29494782

Neighbor

gene id symbol gene type direction distance location
LOC110523581 LOC106566935 coding upstream 48093 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 181945 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 231632 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 306305 29174319 ~ 29187968 (+)
LOC110523574 LOC106566787 coding upstream 327763 29140833 ~ 29166510 (+)
LOC110523583 LOC106566936 coding downstream 218146 29712928 ~ 30103090 (+)
tbx5a LOC106566939 coding downstream 247081 29741800 ~ 29763439 (+)
LOC110523590 rab14 coding downstream 364827 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 610511 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 638890 30133672 ~ 30217715 (+)
G387160 NA non-coding upstream 80 29493574 ~ 29494193 (+)
G387150 NA non-coding upstream 7860 29486190 ~ 29486413 (+)
G387138 NA non-coding upstream 16391 29477487 ~ 29477882 (+)
G386998 NA non-coding upstream 75129 29418878 ~ 29419144 (+)
G387163 NA non-coding downstream 153 29494935 ~ 29495355 (+)
G387167 NA non-coding downstream 5461 29500243 ~ 29500445 (+)
G387189 NA non-coding downstream 24461 29519243 ~ 29519539 (+)
G387368 NA non-coding downstream 175828 29670610 ~ 29670820 (+)
G387374 NA non-coding downstream 180796 29675578 ~ 29675847 (+)
spag8 LOC106566715 other upstream 563342 28926263 ~ 28931410 (+)
G385805 NA other upstream 1076718 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1589542 27904467 ~ 27904731 (+)
G385053 NA other upstream 1787195 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1810880 27675352 ~ 27719165 (+)
G387516 NA other downstream 402204 29896986 ~ 29898134 (+)
G388019 NA other downstream 792169 30286951 ~ 30287824 (+)
G390184 NA other downstream 2465573 31960355 ~ 31960745 (+)
G390393 NA other downstream 2725399 32220181 ~ 32220533 (+)

Expression


Co-expression Network