G387399


Basic Information

Item Value
gene id G387399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29703734 ~ 29703953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU439946
CAAAACATCTGCGGGAACTTCAATAAGGCAAAGCACAACTTCTGATCGTTCAGTTGTATTGTCTGCCTTTGTAAATATGGCCAGCCGCATGTTTCAAATGTCACAAGACTCTGACAACTTTAAATGTGGAAACACCAAGTAAAGATAGCCTATAATATGCAGGGAGCCAATGGAAAATCCGTCTGCAATGTGACTTTTATTAAAGTAATGTTCTATGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439946 True 220 lncRNA 0.39 1 29703734 29703953

Neighbor

gene id symbol gene type direction distance location
LOC110523581 LOC106566935 coding upstream 257554 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 391406 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 441093 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 515766 29174319 ~ 29187968 (+)
LOC110523574 LOC106566787 coding upstream 537224 29140833 ~ 29166510 (+)
LOC110523583 LOC106566936 coding downstream 8975 29712928 ~ 30103090 (+)
tbx5a LOC106566939 coding downstream 37910 29741800 ~ 29763439 (+)
LOC110523590 rab14 coding downstream 155656 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 401340 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 429719 30133672 ~ 30217715 (+)
G387395 NA non-coding upstream 8041 29695449 ~ 29695693 (+)
G387387 NA non-coding upstream 15916 29687616 ~ 29687818 (+)
G387374 NA non-coding upstream 27887 29675578 ~ 29675847 (+)
G387368 NA non-coding upstream 32914 29670610 ~ 29670820 (+)
G387189 NA non-coding upstream 184195 29519243 ~ 29519539 (+)
G387401 NA non-coding downstream 1931 29705884 ~ 29706123 (+)
G387405 NA non-coding downstream 7350 29711303 ~ 29711709 (+)
G387406 NA non-coding downstream 7811 29711764 ~ 29711963 (+)
G387484 NA non-coding downstream 126895 29830848 ~ 29831142 (+)
spag8 LOC106566715 other upstream 772803 28926263 ~ 28931410 (+)
G385805 NA other upstream 1286179 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1799003 27904467 ~ 27904731 (+)
G385053 NA other upstream 1996656 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 2020341 27675352 ~ 27719165 (+)
G387516 NA other downstream 193033 29896986 ~ 29898134 (+)
G388019 NA other downstream 582998 30286951 ~ 30287824 (+)
G390184 NA other downstream 2256402 31960355 ~ 31960745 (+)
G390393 NA other downstream 2516228 32220181 ~ 32220533 (+)

Expression


Co-expression Network