G387556 (LOC106566971)


Basic Information

Item Value
gene id G387556
gene name LOC106566971
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29996478 ~ 30003512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU440125
GACGTTTTTAATACACAGTTACCTGTACACAAGGAAAAAAAACACTAAAATGAAACATTTTCAAATTATAATATCCCTTTTCATTAAGCAATGAAGTTAATACTAGATTCAATTCTAACTAATCAATCATACATACGAGATCACACAAAGTAGAAAgaaaaaataattaattaaaaaGTTTAGCATTGGACTGTACACAAGTCCAGTGTGTACTGGAGGGGGCATTAGGGAAACTGGGTGGTACCAAATAAGACAATTTTGATCGTAATACTTAGAATATAAAAAACTACAATGACTTATTACACAGGTAGAATCCAGAGGCTTAGCAGTCTTGAATGATTTAGGTACAGAACATACATAAAAATCTAGCATTTCTCATTTTTGTCCTAAGCAAGATGCAACATCAAATTTCAAATGACACATTCACGATCTTTGAACATTTTCAGTATGAAAACAGAACAGGGACAGTTTTCCTGCGATAATGACTCCATGAAAAAAACTTCTTAgatttaattatatatatatattttaaataaagtCTTTAGTCAAGTATCTGAGCATACATACATAGTTTTACAAGATAGCAAAGGCAAAAACCTCACAATATGCAACATCCCCCTTTTCCAATATCAGATCATTGTAATAAAAAAAGTACCCATTACATTTTCATATGccttaaaaaaaaactaaaatgaaCTACAAGTTAAATGTCTGTCAAAATATTAGAGAATCCATCTTTGTTTCAAAAATGAAATAAGATATTGCTACTTTTTTAAACCAGAGAACAATAAAATGACAATGAAAATACAAAGCACAACAGGAATTAAATTAGGAACTGACTGCCATTTGCCAACATCACTCCTTGTATTATGTAACAAAATAAATGTTCCTGTAACAAAACATAATTTTCATCACTGAATTAAAATGCTTTATGtaaaaggaaaataaaacatttttacacattcttaaaacatcttatgacaaaataaaaatgtattcaagACTGCTAAGCCCATAATTACGATTTTATTGCAACAGAACTAGAAAAAATAGATTATATTGCATTTACTAAAATGTTACAACTCCGGGGTTCGTTTTGGCGATGTCATTTGAATCAAAAAGGAaaaaatagaaaacaaaacaGCTCTCGCATTAGTCCAAAAGGGATCCCAGGAATTGTCCATTCAAAATAATGGTGTACACAAGTATTTAGTAACAATTAAATGTTCCTGATTTAGAAATATTCTTCTTTTTTTATTGTATAAGTCAGTCTACAGCTAGTGTTTCTCACTAAGAAAAAAGTAAGTCTTCAAGGCGTTGCAAATCTAGAAACCTGTTACAAAAGGTTTGTTTTCATCCTCAATGATTCAAAAATCTTCAACTAAAGGGCGTCCTCTCTAATGATCCTGAAGGCCTGGGGCCTGTGTCTGCTGTGCACCTTGGCCATAGTAGGCCCCCTGTTGTCTGTAATACTCCACCCAGGCAGCACTGTAATCCGGAGGGGAGCTCTGCTGGGAGCCAGGGCCTGCTGCCTGGtTGTTTCTTGTAGTATTCCTCCCATGCTTTGCTGTAGTCAGGGCCACTGCTCTGGGCTTGGCTCTGCTGACTGGGGTCCTGCTGGCCCTGAGGCTGCCATGTCTGATATGTTGTGCCCCATCCACCTGTCATGAATGTCTGGGGTCCATTCTGATGAGGGGTAGCTGGTCCTTGACCAAAGGGGTTCAGATTAAAACTGCTGTTGCCCCCCATTCCTGAGGcCCCAATCTTCTCATCGATCAGCTGGCGGGCCATTTCCATCTGTTGGGAGGTGCCGCGGATGGAGAAAATGCGCACGTTGGGGTCGGTGTTGGGCGGCGGGTTTCTCTGCAGCTCCACGTGCGCTCCAGACTGCTGGTTGATGTTCTTGATGGTTTCGCCACCTTTAGGAAAGGGGAAATTTAAAACGTGAGTCAAAGTCAGCAACAAATGCACAAGTGTCAATTTGACCCCCAATCAGTACTCTGCTGTCTGATACCATTCTTTAGGCTTCACCACAATTACCTAAACTCATCCGACTGGAGGTTAGACTCGTAGTGATAACTATAGGAGACCCTGGCATGTGTCCTTCAGCTCCATGCCCATTCTATTTGAACATCCGTGCTAATCAGAGACTAAGGTCGAC

Function

NR:

description
far upstream element-binding protein 3-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440125 True 2161 lncRNA 0.38 6 29996478 30003512

Neighbor

gene id symbol gene type direction distance location
LOC110523590 rab14 coding upstream 93555 29859609 ~ 29902923 (+)
tbx5a LOC106566939 coding upstream 233039 29741800 ~ 29763439 (+)
LOC110523583 LOC106566936 coding upstream 273790 29712928 ~ 30103090 (+)
LOC110523581 LOC106566935 coding upstream 550298 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 684150 29304337 ~ 29312328 (+)
LOC110524747 LOC106567126 coding downstream 101781 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 130160 30133672 ~ 30217715 (+)
LOC110523600 LOC106567149 coding downstream 252861 30256373 ~ 30260305 (+)
rgs3a LOC106565973 coding downstream 336294 30339806 ~ 30495960 (+)
LOC110523597 LOC106565929 coding downstream 671424 30674936 ~ 30711660 (+)
G387570 NA non-coding upstream 19776 29975379 ~ 29976702 (+)
G387484 NA non-coding upstream 165336 29830848 ~ 29831142 (+)
G387406 NA non-coding upstream 284515 29711764 ~ 29711963 (+)
G387405 NA non-coding upstream 284769 29711303 ~ 29711709 (+)
G387401 NA non-coding upstream 290355 29705884 ~ 29706123 (+)
G387597 NA non-coding downstream 29189 30032701 ~ 30077928 (+)
G387655 NA non-coding downstream 110227 30113739 ~ 30184969 (+)
G387657 LOC106567126 non-coding downstream 119183 30122695 ~ 30123495 (+)
G387678 NA non-coding downstream 165838 30169350 ~ 30169959 (+)
G387516 NA other upstream 98344 29896986 ~ 29898134 (+)
spag8 LOC106566715 other upstream 1065547 28926263 ~ 28931410 (+)
G385805 NA other upstream 1578923 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 2091747 27904467 ~ 27904731 (+)
G388019 NA other downstream 283439 30286951 ~ 30287824 (+)
G390184 NA other downstream 1956843 31960355 ~ 31960745 (+)
G390393 NA other downstream 2216669 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 3155314 33158826 ~ 33162980 (+)
G391805 NA other downstream 3357445 33360957 ~ 33361341 (+)

Expression


Co-expression Network