G387712


Basic Information

Item Value
gene id G387712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30261137 ~ 30261674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU440293
ATTCAATTGACAGGGAGACAGACCTGCCTGACTATTTACACGAGACGTGTGTAAATACACCTTTTGGCTGCGCAACTAAAACACCCTCTGCACAAACGGCaaaattaattacagatttcAGAAAGTGAAATAAGCGTTTGTCATGGCGACAAAGCTCATTAAGCATATGTGGAATTGACCATGAAACACACCAGACCTTTCCAATGCAACAGAAAAACATGTGCCAATCAGTGTGTTCGGTGGCTCTAGAAAAATGTGGGGAAAGTTTTTTTTCAAAGTCCATGTTGAATGAAGCACTACTTTAAGCACAATTATTGGCCATTCAATACTTACACTATTTCTACATGCACACAGCATTTTCTAGAGCAGTATCTAGGTCATGTTAGGAGTTGAAACAGTCACTGTGTATGACCCCCTGAGTGTCCATCCCTCCAAACACAAAGGCAAGCTGTAGTGTCTCTGATGCTGGGGAGGTCTGGGCCCCCTCCACTGCTGCCCAGTCTGTTGGGTGTCAGGTCCCCTTCAAACCTCAGCAGGG

Function

NR:

description
PREDICTED: rab9 effector protein with kelch motifs-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440293 True 538 lncRNA 0.44 1 30261137 30261674

Neighbor

gene id symbol gene type direction distance location
LOC110523600 LOC106567149 coding upstream 832 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 43422 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 152588 30105293 ~ 30112442 (+)
LOC110523590 rab14 coding upstream 358214 29859609 ~ 29902923 (+)
tbx5a LOC106566939 coding upstream 497698 29741800 ~ 29763439 (+)
rgs3a LOC106565973 coding downstream 78132 30339806 ~ 30495960 (+)
LOC110523597 LOC106565929 coding downstream 413262 30674936 ~ 30711660 (+)
LOC110522910 LOC106565903 coding downstream 480180 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 704465 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1891234 32152908 ~ 32160417 (+)
G387711 NA non-coding upstream 19 30260912 ~ 30261118 (+)
G387655 NA non-coding upstream 76168 30113739 ~ 30184969 (+)
G387678 NA non-coding upstream 91178 30169350 ~ 30169959 (+)
G387657 LOC106567126 non-coding upstream 137642 30122695 ~ 30123495 (+)
G388013 NA non-coding downstream 22153 30283827 ~ 30284092 (+)
G388017 NA non-coding downstream 23911 30285585 ~ 30285784 (+)
G388448 NA non-coding downstream 350565 30612239 ~ 30612506 (+)
G388472 NA non-coding downstream 365972 30627646 ~ 30628015 (+)
G387516 NA other upstream 363003 29896986 ~ 29898134 (+)
spag8 LOC106566715 other upstream 1330206 28926263 ~ 28931410 (+)
G385805 NA other upstream 1843582 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 2356406 27904467 ~ 27904731 (+)
G388019 NA other downstream 25277 30286951 ~ 30287824 (+)
G390184 NA other downstream 1698681 31960355 ~ 31960745 (+)
G390393 NA other downstream 1958507 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2897152 33158826 ~ 33162980 (+)
G391805 NA other downstream 3099283 33360957 ~ 33361341 (+)

Expression


Co-expression Network