G388477


Basic Information

Item Value
gene id G388477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30629352 ~ 30629649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU441182
AGTCTCTCCAGTGCAaatagtctctaaggtgcaggtctGTTTAGGGAGACAGCTAGGTTTAGcttttcagcagtctgatggcctggcggtagaagctgtctcggagcctgttggtccgagaccCAAAGCTCTTACAACGCTTGCCAGGTGGTAACGGAGTGAACAGTCTGTggtttgggtgactggagtccttGGTTCTCTCAGGCCTTCTTCAGACACAGCCTGGTGTAGATGTCCTAGGAGGCATAGTGCACGCCCCCAGTGATATATTGGGCCATCTGTACTAGAGCCTCACCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU441182 True 298 lncRNA 0.53 1 30629352 30629649

Neighbor

gene id symbol gene type direction distance location
rgs3a LOC106565973 coding upstream 133392 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 369047 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 411637 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 520803 30105293 ~ 30112442 (+)
LOC110523590 rab14 coding upstream 726429 29859609 ~ 29902923 (+)
LOC110523597 LOC106565929 coding downstream 45287 30674936 ~ 30711660 (+)
LOC110522910 LOC106565903 coding downstream 112205 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 336490 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1523259 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 1628279 32257928 ~ 32270782 (+)
G388472 NA non-coding upstream 1337 30627646 ~ 30628015 (+)
G388448 NA non-coding upstream 16846 30612239 ~ 30612506 (+)
G388017 NA non-coding upstream 343568 30285585 ~ 30285784 (+)
G388013 NA non-coding upstream 345260 30283827 ~ 30284092 (+)
G388479 NA non-coding downstream 713 30630362 ~ 30635355 (+)
G388483 NA non-coding downstream 6068 30635717 ~ 30635954 (+)
G388554 NA non-coding downstream 99289 30728938 ~ 30729182 (+)
G388615 NA non-coding downstream 196060 30825709 ~ 30825985 (+)
G388616 NA non-coding downstream 196651 30826300 ~ 30826523 (+)
G388019 NA other upstream 341528 30286951 ~ 30287824 (+)
G387516 NA other upstream 731218 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 883158 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 1698421 28926263 ~ 28931410 (+)
G385805 NA other upstream 2211797 28416605 ~ 28417555 (+)
G390184 NA other downstream 1330706 31960355 ~ 31960745 (+)
G390393 NA other downstream 1590532 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2529177 33158826 ~ 33162980 (+)
G391805 NA other downstream 2731308 33360957 ~ 33361341 (+)
G392776 NA other downstream 3517825 34147474 ~ 34150795 (+)

Expression


Co-expression Network