G388479


Basic Information

Item Value
gene id G388479
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30630362 ~ 30635355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU441184
tggccaaacagttatatttttgtttcatcagaccagaggacatttctctaaaaagtatgatctttgtccccatgtgcagttgcaaacgtagtctggcttttttatggtggttttgaagcagtggcttcttccttgctaagcggcctttcaggttatgtcgatataggactcgttttactgtggatattgtcacgagtccgaccgagggtggttTCCCTTCCCgggcgggtggcgctcggcggtcgtcgtcaccggcctattagctgccactgattgtctttcctccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU441184 True 289 lncRNA 0.49 2 30630362 30635355

Neighbor

gene id symbol gene type direction distance location
rgs3a LOC106565973 coding upstream 134402 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 370057 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 412647 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 521813 30105293 ~ 30112442 (+)
LOC110523590 rab14 coding upstream 727439 29859609 ~ 29902923 (+)
LOC110523597 LOC106565929 coding downstream 39581 30674936 ~ 30711660 (+)
LOC110522910 LOC106565903 coding downstream 106499 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 330784 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1517553 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 1622573 32257928 ~ 32270782 (+)
G388477 NA non-coding upstream 713 30629352 ~ 30629649 (+)
G388472 NA non-coding upstream 2347 30627646 ~ 30628015 (+)
G388448 NA non-coding upstream 17856 30612239 ~ 30612506 (+)
G388017 NA non-coding upstream 344578 30285585 ~ 30285784 (+)
G388483 NA non-coding downstream 362 30635717 ~ 30635954 (+)
G388554 NA non-coding downstream 93583 30728938 ~ 30729182 (+)
G388615 NA non-coding downstream 190354 30825709 ~ 30825985 (+)
G388616 NA non-coding downstream 190945 30826300 ~ 30826523 (+)
G388617 NA non-coding downstream 193887 30829242 ~ 30830252 (+)
G388019 NA other upstream 342538 30286951 ~ 30287824 (+)
G387516 NA other upstream 732228 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 884168 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 1699431 28926263 ~ 28931410 (+)
G385805 NA other upstream 2212807 28416605 ~ 28417555 (+)
G390184 NA other downstream 1325000 31960355 ~ 31960745 (+)
G390393 NA other downstream 1584826 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2523471 33158826 ~ 33162980 (+)
G391805 NA other downstream 2725602 33360957 ~ 33361341 (+)
G392776 NA other downstream 3512119 34147474 ~ 34150795 (+)

Expression


Co-expression Network