Gene
RNA
| Item | Value |
|---|---|
| gene id | G389992 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 31884539 ~ 31911110 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU442756 | True | 450 | lncRNA | 0.47 | 3 | 31884539 | 31911110 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522913 | LOC106565915 | coding | upstream | 912196 | 30966139 ~ 30975087 (+) |
| LOC110522910 | LOC106565903 | coding | upstream | 1028941 | 30741854 ~ 30856071 (+) |
| LOC110523597 | LOC106565929 | coding | upstream | 1172879 | 30674936 ~ 30711660 (+) |
| rgs3a | LOC106565973 | coding | upstream | 1388579 | 30339806 ~ 30495960 (+) |
| LOC110523600 | LOC106567149 | coding | upstream | 1624234 | 30256373 ~ 30260305 (+) |
| LOC110523608 | NA | coding | downstream | 241798 | 32152908 ~ 32160417 (+) |
| lhx3 | lhx3 | coding | downstream | 346818 | 32257928 ~ 32270782 (+) |
| LOC110523612 | LOC106565885 | coding | downstream | 422392 | 32333502 ~ 32336514 (+) |
| LOC110523614 | LOC106565718 | coding | downstream | 429766 | 32340876 ~ 32390222 (+) |
| nup214 | LOC106565702 | coding | downstream | 493388 | 32404498 ~ 32485105 (+) |
| G389957 | NA | non-coding | upstream | 52091 | 31824404 ~ 31832448 (+) |
| G389915 | NA | non-coding | upstream | 118948 | 31765339 ~ 31765591 (+) |
| G389901 | NA | non-coding | upstream | 140072 | 31744172 ~ 31744467 (+) |
| G389757 | NA | non-coding | upstream | 234223 | 31650093 ~ 31650316 (+) |
| G389754 | NA | non-coding | upstream | 235184 | 31649138 ~ 31649355 (+) |
| G390199 | NA | non-coding | downstream | 62143 | 31973253 ~ 31973492 (+) |
| G390256 | NA | non-coding | downstream | 105774 | 32016884 ~ 32017191 (+) |
| G390278 | NA | non-coding | downstream | 121689 | 32032799 ~ 32033003 (+) |
| G390289 | NA | non-coding | downstream | 126856 | 32037966 ~ 32038360 (+) |
| G390291 | NA | non-coding | downstream | 130998 | 32042108 ~ 32042369 (+) |
| G388019 | NA | other | upstream | 1596715 | 30286951 ~ 30287824 (+) |
| G387516 | NA | other | upstream | 1986405 | 29896986 ~ 29898134 (+) |
| tbx5a | LOC106566939 | other | upstream | 2138345 | 29741800 ~ 29763439 (+) |
| spag8 | LOC106566715 | other | upstream | 2953608 | 28926263 ~ 28931410 (+) |
| G385805 | NA | other | upstream | 3466984 | 28416605 ~ 28417555 (+) |
| G390184 | NA | other | downstream | 49245 | 31960355 ~ 31960745 (+) |
| G390393 | NA | other | downstream | 309071 | 32220181 ~ 32220533 (+) |
| G391513 | LOC100136561 | other | downstream | 1247716 | 33158826 ~ 33162980 (+) |
| G391805 | NA | other | downstream | 1449847 | 33360957 ~ 33361341 (+) |
| G392776 | NA | other | downstream | 2236364 | 34147474 ~ 34150795 (+) |
