G390199


Basic Information

Item Value
gene id G390199
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 31973253 ~ 31973492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU442977
atgtcatgcagccttTAGTCAGGACGACAACGACAAGTTTAGACAAAGACGAGCTTTCCAGtaggtttaccaaaacattcaaggaacGTTTTCTCAAAAATGAGTTACAAGTTTtttttaacctttgtttaactaggcaagtcagttaagaacaaattcttattttcaatgacagtctaggaacagtgggttaactgccttgtacagggggagaacaacatatttttaacttgtcagctc

Function

NR:

description
protein wntless homolog isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU442977 True 240 lncRNA 0.37 1 31973253 31973492

Neighbor

gene id symbol gene type direction distance location
LOC110522913 LOC106565915 coding upstream 1000910 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1117655 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1261593 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 1477293 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 1712948 30256373 ~ 30260305 (+)
LOC110523608 NA coding downstream 179416 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 284436 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 360010 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 367384 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 431006 32404498 ~ 32485105 (+)
G389992 NA non-coding upstream 62143 31884539 ~ 31911110 (+)
G389957 NA non-coding upstream 140805 31824404 ~ 31832448 (+)
G389915 NA non-coding upstream 207662 31765339 ~ 31765591 (+)
G389901 NA non-coding upstream 228786 31744172 ~ 31744467 (+)
G389757 NA non-coding upstream 322937 31650093 ~ 31650316 (+)
G390256 NA non-coding downstream 43392 32016884 ~ 32017191 (+)
G390278 NA non-coding downstream 59307 32032799 ~ 32033003 (+)
G390289 NA non-coding downstream 64474 32037966 ~ 32038360 (+)
G390291 NA non-coding downstream 68616 32042108 ~ 32042369 (+)
G390283 NA non-coding downstream 112858 32086350 ~ 32091489 (+)
G390184 NA other upstream 12508 31960355 ~ 31960745 (+)
G388019 NA other upstream 1685429 30286951 ~ 30287824 (+)
G387516 NA other upstream 2075119 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2227059 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 3042322 28926263 ~ 28931410 (+)
G390393 NA other downstream 246689 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 1185334 33158826 ~ 33162980 (+)
G391805 NA other downstream 1387465 33360957 ~ 33361341 (+)
G392776 NA other downstream 2173982 34147474 ~ 34150795 (+)
G394882 NA other downstream 3931620 35905112 ~ 35905781 (+)

Expression


Co-expression Network