G390382 (LOC107744057)


Basic Information

Item Value
gene id G390382
gene name LOC107744057
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32206250 ~ 32206667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU443169
GGCCagagtgaggtcatgtctgtGGTACTCCAGGGCCTTGCCGTATTCCTTCAGGTAAAAGTAGGCGTTGCCCAGTTGGCTGTAGATGGCACTGAGGGTCTTCAGGTCTTCTGTTCCCACCTGCACAGCTGCCTCGAAAAACGCTGTCCCCCCTTTAAAGTCCCCTGCCTTACacagcctctctccctccagggcCAACTCCAGACATGAGGCCTCC
>TU443170
GGCCagagtgaggtcatgtctgtGGTACTCCAGGGCCTTGCCGTATTCCTTCAGGTAAAAGTAGGCGTTGCCCAGTTGGCTGTAGATGGCACTGAGGGTCTTCAGGTCTTCTGTTCCCACCTGCACAGCTGCCTCGAAAAACGCTGTCCCCCCTTTAAAGTCCCCTGCCTTACacagcctctctccctccagggcCAACTCCAGACATGAGGCCTCCATCCTGAACACacacggacggacacacacacacggacacacacacagggacagagaaaaagagaatgtCAGTATTACAGCATCAGGGTGCGAAACAGTGCGTCTATGAAGGTACCATGGCAATGGTGTCCGAAAACTGTCATTAACAATGAAAAGTTTATTCCTAAATGTCTCCATGGCAACAGTGTCTGAATCAATATCA

Function

NR:

description
G-protein-signaling modulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443169 False 217 lncRNA 0.57 1 32206250 32206466
TU443170 True 418 lncRNA 0.51 1 32206250 32206667

Neighbor

gene id symbol gene type direction distance location
LOC110523608 NA coding upstream 45833 32152908 ~ 32160417 (+)
LOC110522913 LOC106565915 coding upstream 1233907 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1350652 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1494590 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 1710290 30339806 ~ 30495960 (+)
lhx3 lhx3 coding downstream 51261 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 126835 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 134209 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 197831 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 317914 32524581 ~ 32531600 (+)
G390381 NA non-coding upstream 1873 32203825 ~ 32204377 (+)
G390380 NA non-coding upstream 2637 32202609 ~ 32203613 (+)
G390374 NA non-coding upstream 8681 32196631 ~ 32197569 (+)
G390372 NA non-coding upstream 11822 32194200 ~ 32194428 (+)
G390369 NA non-coding upstream 14531 32191318 ~ 32191719 (+)
G390387 NA non-coding downstream 5952 32212619 ~ 32212818 (+)
G390389 NA non-coding downstream 7775 32214442 ~ 32215359 (+)
G390394 NA non-coding downstream 15560 32222227 ~ 32222435 (+)
G390396 NA non-coding downstream 17081 32223748 ~ 32224097 (+)
G390446 NA non-coding downstream 97939 32304606 ~ 32304829 (+)
G390184 NA other upstream 245505 31960355 ~ 31960745 (+)
G388019 NA other upstream 1918426 30286951 ~ 30287824 (+)
G387516 NA other upstream 2308116 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2460056 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 3275319 28926263 ~ 28931410 (+)
G390393 NA other downstream 13514 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 952159 33158826 ~ 33162980 (+)
G391805 NA other downstream 1154290 33360957 ~ 33361341 (+)
G392776 NA other downstream 1940807 34147474 ~ 34150795 (+)
G394882 NA other downstream 3698445 35905112 ~ 35905781 (+)

Expression


Co-expression Network