G390396


Basic Information

Item Value
gene id G390396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32223748 ~ 32224097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU443186
gcgtttgagcctgtggattactgaagaaaacgtgtaaacaaaactgaggtttttggatataaagagagactttatcaaacaaaaggaacatttattgaataaatgaatgtcttctgagtgcaaacatatgaagatcatcaaaggtaagtgattcattttatctctatttctgacttgtgtaactcttctacttggctggttactgtttgtaatgatttgtctgctgggctatgttctcaaataattgtaaggtatgcttttgccggaaagcatttttgaaatctgacactgtggttggattcacaagaagttaggTTTAAAGattatgtaaaatagttgtatattttctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443186 True 350 lncRNA 0.33 1 32223748 32224097

Neighbor

gene id symbol gene type direction distance location
LOC110523608 NA coding upstream 63331 32152908 ~ 32160417 (+)
LOC110522913 LOC106565915 coding upstream 1251405 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1368150 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1512088 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 1727788 30339806 ~ 30495960 (+)
lhx3 lhx3 coding downstream 33831 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 109405 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 116779 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 180401 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 300484 32524581 ~ 32531600 (+)
G390394 NA non-coding upstream 1313 32222227 ~ 32222435 (+)
G390389 NA non-coding upstream 8389 32214442 ~ 32215359 (+)
G390387 NA non-coding upstream 10930 32212619 ~ 32212818 (+)
G390382 LOC107744057 non-coding upstream 17081 32206250 ~ 32206667 (+)
G390381 NA non-coding upstream 19371 32203825 ~ 32204377 (+)
G390446 NA non-coding downstream 80509 32304606 ~ 32304829 (+)
G390450 NA non-coding downstream 89040 32313137 ~ 32313362 (+)
G390610 NA non-coding downstream 94058 32318155 ~ 32318369 (+)
G390649 NA non-coding downstream 178729 32402826 ~ 32403113 (+)
G390393 NA other upstream 3215 32220181 ~ 32220533 (+)
G390184 NA other upstream 263003 31960355 ~ 31960745 (+)
G388019 NA other upstream 1935924 30286951 ~ 30287824 (+)
G387516 NA other upstream 2325614 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2477554 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 934729 33158826 ~ 33162980 (+)
G391805 NA other downstream 1136860 33360957 ~ 33361341 (+)
G392776 NA other downstream 1923377 34147474 ~ 34150795 (+)
G394882 NA other downstream 3681015 35905112 ~ 35905781 (+)
G394910 NA other downstream 3742840 35966937 ~ 36004829 (+)

Expression


Co-expression Network