G390610


Basic Information

Item Value
gene id G390610
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32318155 ~ 32318369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU443407
ggctaaggtgtatataaacttccgacttcaactgtatacaatgGAGGGTTTTACGTACGTCCAAACTTCTCACAGGAACTGGATAAAGATCCAATATAAAGAAAAAGGGGGAATGTCCACTCACCATTATACTGCTTGCAAATATAATGTTTTACAAACATCATGGAACCGTCTTACAGATCATATTTTCCCTTCTCCAGAAATAACAGACAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443407 True 215 lncRNA 0.37 1 32318155 32318369

Neighbor

gene id symbol gene type direction distance location
lhx3 lhx3 coding upstream 47373 32257928 ~ 32270782 (+)
LOC110523608 NA coding upstream 157738 32152908 ~ 32160417 (+)
LOC110522913 LOC106565915 coding upstream 1345812 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1462557 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1606495 30674936 ~ 30711660 (+)
LOC110523612 LOC106565885 coding downstream 15133 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 22507 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 86129 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 206212 32524581 ~ 32531600 (+)
prrc2b NA coding downstream 237712 32556081 ~ 32597277 (+)
G390450 NA non-coding upstream 4793 32313137 ~ 32313362 (+)
G390446 NA non-coding upstream 13326 32304606 ~ 32304829 (+)
G390396 NA non-coding upstream 94058 32223748 ~ 32224097 (+)
G390394 NA non-coding upstream 95720 32222227 ~ 32222435 (+)
G390389 NA non-coding upstream 102796 32214442 ~ 32215359 (+)
G390649 NA non-coding downstream 84457 32402826 ~ 32403113 (+)
G390700 NA non-coding downstream 218044 32536413 ~ 32536927 (+)
LOC110523621 LOC100194632 non-coding downstream 288786 32607119 ~ 32623203 (+)
LOC118964584 NA non-coding downstream 335333 32653382 ~ 32654170 (+)
G390393 NA other upstream 97622 32220181 ~ 32220533 (+)
G390184 NA other upstream 357410 31960355 ~ 31960745 (+)
G388019 NA other upstream 2030331 30286951 ~ 30287824 (+)
G387516 NA other upstream 2420021 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2571961 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 840457 33158826 ~ 33162980 (+)
G391805 NA other downstream 1042588 33360957 ~ 33361341 (+)
G392776 NA other downstream 1829105 34147474 ~ 34150795 (+)
G394882 NA other downstream 3586743 35905112 ~ 35905781 (+)
G394910 NA other downstream 3648568 35966937 ~ 36004829 (+)

Expression


Co-expression Network