G392776


Basic Information

Item Value
gene id G392776
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34147474 ~ 34150795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU445804
ggatttttaatgattttatttgcgaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctgactctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacacgaccactgataatctacctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagaacagtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagtacatgtccaggcccgtctcaagtttgctagagagcatttggatgatccagaagaagattgggagaatctcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcattgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccctacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctcagcaagggcattgaagatgaaatgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggccaagccagtctccagatctcaaccccatataacatctttggagggagttgaaagtccgtgttgcccagcaacagccacaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccggCAACagagtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttatt
>TU445806
aagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacacgaccactgataatctacctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagaacagtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagtacatgtccaggcccgtctcaagtttgctagagagcatttggatgatccagaagaagattgggagaatctcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcattgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccctacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctcagcaagggcattgaagatgaaatgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggccaagccagtctccagatctcaaccccatataacatctttggagggagttgaaagtccgtgttgcccagcaacagccacaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccggCAACagagtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttatt
>TU445807
tgggagaacttgcacaattggtggctgactaaatatttttttgccccactgtatcttgattacataagtattcaacccccaatgtcaatacatgttagaatctctgagtctatcTGGGTAAATATTTGTCCATTATTCttcaaattcttcaagctctgtcacatTGGCTTGACCATTGCTAGACAATTTTACATctggccatagattttcaagtagatttaagtcaaaactctaaCTCTGCCACtctggaacattcactgtcttcttggtatacaactccagtgtagatttggctttgtgttttaggttattgtcctgctgaaaggggaattaatctcccagtgtctggtcgaaagcagactgaaccaagtttccCTCTAAGATTTAGCCTCTTGCGttaatttttttatcctgaaaaactccccagtccttaacaactACAAGCATACCCAAAACATAATGCAGTCACCACTATACTTGaaatataaagagtggtactcagtaatgtgttgtattggcttgaaaatatggagggCAGTACTCAGTAATTCATTTGTTTAAAAGAATTAtccaaaaacataattccactttgacattatggggtaaaaataaaataacaaatgcaACATTCAACATTTGATCCATTTttaatgcaggctgtaacacaacaaaatttgaaaaaagtaaacgggtgtgaaaactttctgaaggtactgcatATCAAATTATTTCACATTAGCTCTATGCTTGTCAAATAAATAATATTATACAGTTATCAGCTTCTGAGCTATTCCATTAGAGAAGAATACAGAAATTGAAATAGGCTAACAAGTAGTGTGTTAAATCAAATTGACATGCATTTAACTCTAAAATGACATGGACGGTACACCAGTGCCATGGTGAATAGAGAAGAGTACAATATATAGTATTTTCCTACGGATATTCCACATTTCTTCATGGTCACACAGCAAGTAGCCAACAATGTAGGTTTGGTTTGAATTAAATTAGGTGTGTTTGAAAACTGATCTTGACTAGGTTTGGAAAGTACATTTATGATATGCTGTGTTTTTCCCAAAGACCAGGGAAAGCCTGCTAGCGCAGCTTTGTGATATCGCCAGGCAGTGCTTACGCACTCACTCTTTCAAACACATACATGCACCCTtccacagacacatgcatacatcCACAGACACACTTGCACTTAGATGAGTGTGTGATGGATGAGCCAGTCATACAACGATAACTTCCCAGTGTAAGTGATTTAATCGCTATCGCTCAATTGCACAGTTGAAAGCTTTTTGTCAGACACAGGCTCCCTGCTAGGGGTAGCTCTCACACCCAGCGGTCATTGGACGTTGGTACTGGATCTCAGTCGGTGCCATGACATGTTATTTGTCTTCACTATCACTGGTTTTGTTTCAACCAGCCCAGATTAAATCAAGGCCAGCAGCATCACAACTCTTTGTATGTGTCCATTTGTGGGCCCCCGAATGGGTCACAGGACAAATGGTCCCTGGTGGTTCAAAATTCCTAACCGCACATCAATTCAATGTCCATTTgttggcatagtatagtatctcACCTGATataataccaacacacacacagggagagctTAGAAAACAGATGCTATGGTAGGTGAATATGGGTAGTTCCTTCTCACTGTGTACATAGTATGTCATCGGCAGCTTAAGTCATGCATGTGCCATCTGGGGGTTTGGCAACATGCCATGTTAGCTGTTTTTTCTGGGGTCATTTAACACGAAGGGATGAGTTGACTCTGTTCTGGGTGAGGAACTGGCAGTCCCATACAGCTTTTAATGTAAAAAAGGTGGACCGGAAAAGGGAGCTAAGATCTTTCTGTCAggtcctgtctgtgtctgtctgatgaACTGTAATGCTAAGGCTCAGGGTATTAAAGTCTGT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU445804 False 1228 TUCP 0.45 1 34147474 34148701
TU445806 False 996 lncRNA 0.46 1 34147706 34148701
TU445807 True 1926 lncRNA 0.40 2 34148849 34150795

Neighbor

gene id symbol gene type direction distance location
si:ch211-127i16.2 LOC106565287 coding upstream 380 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 58722 33846773 ~ 34088984 (+)
trnaa-ugc-11 NA coding upstream 114866 34032765 ~ 34032840 (+)
LOC110523646 LOC106565369 coding upstream 303585 33830706 ~ 33844121 (+)
LOC100136128 LOC106565394 coding upstream 347992 33640488 ~ 33799714 (+)
adra1ab LOC106565247 coding downstream 285991 34436786 ~ 34448792 (+)
LOC110523660 LOC106565209 coding downstream 936031 35086826 ~ 35206863 (+)
si:dkey-242g16.2 LOC106565196 coding downstream 1203303 35354098 ~ 35357244 (+)
stoml2 stml2 coding downstream 1317145 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 1331433 35482228 ~ 35542795 (+)
G392756 NA non-coding upstream 55520 34091852 ~ 34092186 (+)
G392063 NA non-coding upstream 57912 34089095 ~ 34089794 (+)
G392226 NA non-coding upstream 68596 34078854 ~ 34079110 (+)
G392195 NA non-coding upstream 76321 34028045 ~ 34071385 (+)
G392804 NA non-coding downstream 31945 34182740 ~ 34183700 (+)
G392805 NA non-coding downstream 32972 34183767 ~ 34183976 (+)
G392806 NA non-coding downstream 34524 34185319 ~ 34185533 (+)
G392900 NA non-coding downstream 71361 34222156 ~ 34222491 (+)
G392911 NA non-coding downstream 84379 34235174 ~ 34235518 (+)
G391805 NA other upstream 786365 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 984726 33158826 ~ 33162980 (+)
G390393 NA other upstream 1927173 32220181 ~ 32220533 (+)
G390184 NA other upstream 2186961 31960355 ~ 31960745 (+)
G388019 NA other upstream 3859882 30286951 ~ 30287824 (+)
G394882 NA other downstream 1754317 35905112 ~ 35905781 (+)
G394910 NA other downstream 1816142 35966937 ~ 36004829 (+)
you2 you2 other downstream 1882465 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 2052106 36202901 ~ 36206616 (+)
G395034 NA other downstream 2129505 36280300 ~ 36301290 (+)

Expression


Co-expression Network